TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAGAGAAGACCTTGTTAGGACTGTTATAGTTTATATATGCTCAG
CCCAGGAAGTGGCACTATCAGAAGATATGGCCCTGTTGGAGTGTCATTGT
GGGTGTGAGCTTTAAGACCCTCATCCTAGCTGCCTGGAAGTCAGTATTCT
GCTAGCAGCCTTCAGATGAAGATGTAGAACTCTCAGCTCCTCCTGCACCA
TGCCTGCCTGGATGCTGCCATGCTCCCACCTTGATGATAATGGACTGAAC
CTCTGAACCTGTAAGCAAGCTCCAATTAAATTTTGTCTTTATAAGAGTTG
CTTTGATCGTGGTGTCTGTTTACAGCAGTAAAACCCTAAGACAAGGTCAG
TCAGCAAATTATACCCACCTTCCAGTTATAAAGCCCATATAATTCTTTGC
CATACTTAGTTGAAAATTAACCATTGTTTTTGTTGCAAAAATTTTAGGAT
CAGTTTCCTTTTGTAACTATGTATCTGACACAAGAAAATGCACACAGAAA
CAGGATGCATCATCTGTTGAAACCTGAGAAAACACATACACACACATACA
CACACTTTGTGTAACTAAGAGCGGCTTATTTAAAGGCAAGTGCTGTACCT
CTGAGCTTCATCAATTACTCAACATTTTAAAGACAATTTATAAGTTAATT
CAACAAATATTGATTGAACTTCCATTATGTAGTTTTGCTACCGATGTAG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAGTAATGAATGGCTGAG
AAGCACCTGAAAAGATGTTCAGCATCCTTAATCATCAGGGAAATGCAATT
CAAAGCAACCCTGAGATTCCACCTCACATCAATCAGAATCGCTAAGATCA
AAAATTCATGTGAAAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTTTTGGTGGAATTGCAAGCTTGTACAACCACTCTAGAAATC
AGTACTATGTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCACA
ATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGGTAAGAAGGA
CACATGCTCCATCACCGCCATATAAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATTTACACAATGGAGTACTACTCAACTATTAAAAACAATGAATTTAT
GAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAATCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGA
TAGTAGCCCAGAAACTTAGAATACCCAAGATATAAGATACAATTTGCTAA
ACCCATGAAACTAAAGATGAACGAAGACCANAGTGTGTACACTTTGCCCC
TTCTT

Query= MSMg01no326_i11.b1 MSMg01no326_i11.b1 CHROMAT_FILE:
MSMg01no326_i11.b1 PHD_FILE: MSMg01no326_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:15 2005
         (553 letters)



>mm_chr6_35467697_35468648
          Length = 952

 Score =  955 bits (494), Expect = 0.0
 Identities = 532/550 (96%), Gaps = 11/550 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagagaaga-ccttgttaggactgttatagtttatatatgctcagcccaggaa 63
           ||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 204 gaattcagagagaagagacttgttaggactgctatagtttatatatgctcagcccaggaa 263

                                                                       
Query: 64  gtggcactatcagaagatatggccctgttggagtgtcattgtgggtgtgagctttaagac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtggcactatcagaagatatggccctgttggagtgtcattgtgggtgtgagctttaagac 323

                                                                       
Query: 124 cctcatcctagctgcctggaagtcagtattctgctagcagccttcagatgaagatgtaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctcatcctagctgcctggaagtcagtattctgctagcagccttcagatgaagatgtaga 383

                                                                       
Query: 184 actctcagctcctcctgcaccatgcctgcctggatgctgccatgctcccaccttgatgat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actctcagctcctcctgcaccatgcctgcctggatgctgccatgctcccaccttgatgat 443

                                                                       
Query: 244 aatggactgaacctctgaacctgtaagcaagctccaattaaattttgtctttataagagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatggactgaacctctgaacctgtaagcaagctccaattaaattttgtctttataagagt 503

                                                                       
Query: 304 tgctttgatcgtggtgtctgtttacagcagtaaaaccctaagacaaggtcagtcagcaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgctttgatcgtggtgtctgtttacagcagtaaaaccctaagacaaggtcagtcagcaaa 563

                                                                       
Query: 364 ttatacccaccttccagttataaagcccatataattctttgccatacttagttgaaaatt 423
           |||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttataaggagcttccagttataaagcccatataattctttgccatacttagttgaaaatt 623

                                                                       
Query: 424 aaccattgtttttgttgcaaaaattttaggatcagtttccttttgtaactatgtatctga 483
           ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 aac-attgtttttgttgcaaaaattttaggatcagtttccttttgtaactgtgtatctga 682

                                                                       
Query: 484 cacaagaaaatgcacacagaaacaggatgcatcatctgttgaaacctgagaaaacacata 543
           |||||||||||||||||||||||||||||         ||||||||||||||||||||||
Sbjct: 683 cacaagaaaatgcacacagaaacaggatg---------ttgaaacctgagaaaacacata 733

                     
Query: 544 cacacacata 553
           ||||||||||
Sbjct: 734 cacacacata 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space:   511506
Effective search space used:   511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)