NGGGGGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCACATATTGAAGAAAGATCGATGATCTATCTGAAAAG
CTAAACGACATTAATATAGTCGAGGCCCTTAGGTGTGTGGTATAATACAC
ACCCTTTTCATTTAGATTGCTTTTTCCTCTGGACTTAGGGTATGCCATCA
CAAAACTGAGGAGCACTAAGGTAATTGATTATAATCTTTCCTTGTTCTGT
GATGCTTCTTTAGTTTTGTTTTTTCATTTTAAAAGAGTTGGAAGGTAACT
TATTCATATTCCAAATTCCTATATGTTTTGCAACCATCCTGTTAACACCT
TTCTCACTCAACCCCATAGTTATTTCTCTGTGTATTACAGTTATTTGGAC
AATTTTAGAAAAAAATCAGGAAATAAACAACACACTAGACTCTGAAGGCT
AGACATATTCTATCTTACACTCTTCTGATCCCCTAGCACTTTGTGATAAA
TAAAGGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNTNNNNNTNNNN
TTTTTTTTTTTTTTNTTTNTTTTTNTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTNTTNNNNTTTTTTTTTN
TTTTTNTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTNNTT
TTTNTTTTTTTTTT

AAAACACCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCTACTCTTAACCAATG
GCTAAAGAGAAAATCCCAAGGCAATTAGAAAATATCTTCTAGAGAAGATA
CTTTTAACCCTTAAAAGATTTGAGGCCCCAGGAAGTGGAGCAGCCTGGCT
TGATGGGGTGAGGTGGTGTGAAGGGGTGGNNACNNCCNCTNGNNNNNNNN
NNNNNNNNNGNNNNNNNNNNNNNNNNNGNNNNNNNNGNNNNNNNNNNNNN
GNNNGNNNNNNNNNNNNNNNNGNNNNNTTTTTTTTTTGTTTTGTTGTTTG
TTTTTTTTTGTTTTGTTTGTTTTTGTGTCCCTCTTCGTGTGTTCTTCTTT
TTTCCTTCTTGTTTTTTGTGTTNTCCCCCCCCCCCCCCCNNNNGGTNGNT
TGTGNNTTGTTTGGTTGCGTTCTGTCCTCTTCTCCTTGTTTTGGTGTTCG
CCCTTGGTGTTCCTCCTCTTTTCTTTTTTGCGCCTTTTCTGTTTTCGCCT
CTTGTTCCTTCCTCTCCCTTTTTCTGCTCTTTCCTTTTTCTCTTCGTCTG
TTCCCTGTTTCTTTCTGCTCCCTCCTCCTTTTGTCTTCTCCCTGTGTTCT
CGCGCGCTTGTTCTGTTTTTTCTCTGTTTCTTTTCCTTTCCCGTTCTTCC
TTGTCCGTGTTTCTCCCTCCCCCTTCTTCTCCTTTCCGCG

Query= MSMg01no327_n22.b1 MSMg01no327_n22.b1 CHROMAT_FILE:
MSMg01no327_n22.b1 PHD_FILE: MSMg01no327_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:51 2005
         (484 letters)



>mm_chr6_76770934_76771818
          Length = 885

 Score =  880 bits (455), Expect = 0.0
 Identities = 473/479 (98%), Gaps = 1/479 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   attccacatattgaagaaagatcgatgatctatctgaaaagctaaacgacattaatatag 66
           |||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 207 attccatatattgaaggaagatcgatgatctatctgaaaagctaaacgacgttaatatag 266

                                                                       
Query: 67  tcgaggcccttaggtgtgtggtataatacacacccttttcatttagattgctttttcctc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcgaggcccttaggtgtgtggtataatacacacccttttcatttagattgctttttcctc 326

                                                                       
Query: 127 tggacttagggtatgccatcacaaaactgaggagcactaaggtaattgattataatcttt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tggacttagggtatgccatcacaaaactgaggagcactaaggtaattgattataatcttt 386

                                                                       
Query: 187 ccttgttctgtgatgcttctttagttttg-ttttttcattttaaaagagttggaaggtaa 245
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 387 ccttgttctgtgatgcttctttagttttgtttttttcattttaaaagagttggaaggtaa 446

                                                                       
Query: 246 cttattcatattccaaattcctatatgttttgcaaccatcctgttaacacctttctcact 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttattcatattccaaattcctatatgttttgcaaccatcctgttaacacctttctcact 506

                                                                       
Query: 306 caaccccatagttatttctctgtgtattacagttatttggacaattttagaaaaaaatca 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 caaccccatagttatttctctgtgtattacagttatttggacaattttagaaaaaaatca 566

                                                                       
Query: 366 ggaaataaacaacacactagactctgaaggctagacatattctatcttacactcttctga 425
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggaaataaaaaatacactagactctgaaggctagacatattctatcttacactcttctga 626

                                                                      
Query: 426 tcccctagcactttgtgataaataaaggaggtgtgtgtgtgtgtgtgtgtgtgtgtgtg 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcccctagcactttgtgataaataaaggaggtgtgtgtgtgtgtgtgtgtgtgtgtgtg 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 885
Length adjustment: 10
Effective length of query: 474
Effective length of database: 875
Effective search space:   414750
Effective search space used:   414750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)