BAC Information

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BAC

Clone NameMSMg01-328A16
Chromosome6 (Build37)
Map Location 47,543,418 - 47,543,787
singlet/doubletsinglet
Overlap geneEzh2
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1
Downstream geneRn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328A16.T7 (MSMg01no328_a16.b1)MSMg01-328A16.TJ (MSMg01no328_a16.g1)
ACCAG445241AG445242
length739766
length of high quality
(start - end)
371 (43 - 413)214 (69 - 282)
definitionCHROMAT_FILE: MSMg01no328_a16.b1 PHD_FILE: MSMg01no328_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:04 2005CHROMAT_FILE: MSMg01no328_a16.g1 PHD_FILE: MSMg01no328_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAAAGCCGCGGAATT
CACTGCTAATATCCATTAATAAAAAGTAATTGAAAATACATTTTTAAATC
GCCAAAAATATAAACTACATTCAACTGTGACAGCATTAGTATTTTTCAAA
TGTTTTATGTGCCATTAAAAACCCATAGAATTAAACTGATAACGACTTTC
CTGAAACTGAAAAGGCGTTAGCGTTGTTGTACGGTATTTTAAATATCAAA
GACAAATTTTTACTTCAGATGAATTTAGATTCTACAGATCCTGTTAATAA
GCAAAGTAAGTTTCTTTGAATTGTGACAAGAATACACTCGAATTTCTTAG
GCAACAAATGCCTTTTCTGACTCACCAAAGCTATTGTTCACGGGAAACGT
GACCCACTAAAAAGACCCCGCCAATTCCATAGCGTATACCCACATTTCTC
GTGGGTATTTTATTTCGATCATCTAGTCTTCAACAACCTACCCCTGGAGA
TTTGGGGAATAATCACTGAGTAAATGACAGTTGATTTCGTTAGCACCTGT
CACCATTCTCATAAGCACACAAGTTGGCCAAAACAGATTTTGTTTTTCTT
TCAGGTTTTGGTCCTTTAGAAAGTACAACTCTCTACACTTTCTCCCAGTT
TTCCGATAGCCCGTGCTCTCTCAAATTCTTCCATTTTCCATAAATAACCC
TGATACTTAGGTACCGCCGCACTGCAAAGTGTATTTGTA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATCTCAACAGCATTATCTCAAGAGGATTCCTC
CTCAGGTCGATCCGCAAGACTCTGGCCCATCAGAGCAGGGGTGGGGTGGG
GTGGGGGCATCACCCAGGAGGGCAATCACAGGAGGTTGCAGGCAGTGAGT
GTCTTGCCTTGCCCAATGTCAGCAGGCCAGGGCCATGAGGGATCTAGCAT
AGAGAGGCAGGAGAAGGCAGACCCCTCAGGAGTAAGAAGCCATGCTGGGC
CAAAGGTCCTGGGGCCCCCTGTTTCTCCAGGATACACCCAGCAGAGCGTA
GCACAATGCTGGTCCGGTGCACCGCTGGTGCGATTCCAGGAGGCTCACTT
GCCCTCTGCAGCCCCCCCTGCGAGTCTAACACGGTGCAGTCCCCGTCCGC
GTGTATTTGTTCTTCCGAGTGCCCTTAACTGTGTGGCTCTTATTGTTAGG
CCATGTTTCCTGGTTCCGTATATTCGTTTGTGTTCCCTTTGTACTCCTGT
TCTCTCTACCATATCTTTTCTCTCTTTTTATCTTATTATTCTTTTCATGT
TTCCGCCTTTTTACCTTATTCCCCTATCTTTTTATTATTTTTTTTTCCTC
TCCTTTTTCATCAAATTTTCTTTTTCTTCTCTTTTTATTCCTTCATCCAC
ATTCTCTCCCTTACATTCTTATTTTCTACTTTATTACTCACCACACCAAA
TTTACTTCTCATCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_a16.b1 MSMg01no328_a16.b1 CHROMAT_FILE:
MSMg01no328_a16.b1 PHD_FILE: MSMg01no328_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:04 2005
         (371 letters)



>mm_chr6_47543215_47543987
          Length = 773

 Score =  696 bits (360), Expect = 0.0
 Identities = 367/370 (99%), Gaps = 2/370 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcactgctaatatccattaataaaaagtaattgaaaatacatttttaaatcgccaa 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcactgctaatattcattaataaaaagtaattgaaaatacatttttaaatcgccaa 263

                                                                       
Query: 64  aaatataaactacattcaactgtgacagcattagtatttttcaaatgttttatgtgccat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaatataaactacattcaactgtgacagcattagtatttttcaaatgttttatgtgccat 323

                                                                       
Query: 124 taaaaacccatagaattaaactgataacgactttcctgaaactgaaaaggcgtt--agcg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 324 taaaaacccatagaattaaactgataacgactttcctgaaactgaaaaggcgttgtagcg 383

                                                                       
Query: 182 ttgttgtacggtattttaaatatcaaagacaaatttttacttcagatgaatttagattct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgttgtacggtattttaaatatcaaagacaaatttttacttcagatgaatttagattct 443

                                                                       
Query: 242 acagatcctgttaataagcaaagtaagtttctttgaattgtgacaagaatacactcgaat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acagatcctgttaataagcaaagtaagtttctttgaattgtgacaagaatacactcgaat 503

                                                                       
Query: 302 ttcttaggcaacaaatgccttttctgactcaccaaagctattgttcacgggaaacgtgac 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcttaggcaacaaatgccttttctgactcaccaaagctattgttcacgggaaacgtgac 563

                     
Query: 362 ccactaaaaa 371
           ||||||||||
Sbjct: 564 ccactaaaaa 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 773
Length adjustment: 9
Effective length of query: 362
Effective length of database: 764
Effective search space:   276568
Effective search space used:   276568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)