Query= MSMg01no328_e23.b1 MSMg01no328_e23.b1 CHROMAT_FILE:
MSMg01no328_e23.b1 PHD_FILE: MSMg01no328_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:25 2005
(694 letters)
>mm_chr6_110561848_110562941
Length = 1094
Score = 928 bits (480), Expect = 0.0
Identities = 527/544 (96%), Gaps = 6/544 (1%)
Strand = Plus / Minus
Query: 5 gaattcagggtgtc--tttccacatctgtgtattcccatggtgggctaaaacctccagat 62
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaattcagggtgtcagtgt--acatctgtgtattcccatggtgggctaaaacctccagat 489
Query: 63 atataaacggttgctttgcagtgtgagttgtttcccatttgaagccagactgcacgttgc 122
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atgtaaacagttgctttgcagtgtgagttgtttcccatttgaagccagactgcacgttgc 429
Query: 123 tgttcatgcttttgtgtgtgtgtaaatccttttgctgtagagcacatttcccttttggca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgttcatgcttttgtgtgtgtgtaaatccttttgctgtagagcacatttcccttttggca 369
Query: 183 agatgctgcttttttcttgtctcctttctggagatgtttgtatcac-tagcaaaatgcta 241
|||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 368 agattctgcttttttcttgtctcctttctggagatgtttgtatc-cttagcaaaatgcta 310
Query: 242 aatgtttatcatttctagatttggttcacaagtacagtatgtgtgcctgtgaaattttca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aatgtttatcatttctagatttggttcacaagtacagtatgtgtgcctgtgaaattttca 250
Query: 302 acttttttacttaagagatctatgttgttactgtttgtttttgagattttatttaaaaat 361
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 249 acttttttacttaagagatctgtgttgttactgtttgtttttgagattttatttaaaaat 190
Query: 362 aaatatcttactagcgcccatggtaagatcatattcaaagaaggtaagaaagaaatgata 421
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aaatatcttactagtatctatggtaagatcatattcaaagaaggtaagaaagaaatgata 130
Query: 422 ggattttcagctgggatgaggaaaatgagagacaattatcctgagaagttgcaagtagag 481
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 129 ggattttcagctgggatgaggaaaacgagagacaattatcctgagaagttgcaagtagag 70
Query: 482 atacaactgagaacaaacactagaaaaagaactcttggggactcatgtaaacactgacag 541
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 69 atacaactgagaacaaacactagaaaaagacctcttggggactcatgtaaacactgacag 10
Query: 542 ccag 545
||||
Sbjct: 9 ccag 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no328_e23.g1 MSMg01no328_e23.g1 CHROMAT_FILE:
MSMg01no328_e23.g1 PHD_FILE: MSMg01no328_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:26 2005
(666 letters)
>mm_chr6_110386388_110387453
Length = 1066
Score = 1133 bits (586), Expect = 0.0
Identities = 655/694 (94%), Gaps = 29/694 (4%)
Strand = Plus / Plus
Query: 1 aacagatagtgaaaaactgaaatggaagaaggggtag-cacttaattaaaacttatggca 59
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 174 aacagatagtgaaaaactgaaatggaagaagggg-aggcacttaattaaaacttatggca 232
Query: 60 tttataaatgaagtaagagttatgaactatagattacaaacaatattacatgttaataaa 119
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 233 tttataaatgaagtaagagttatgaactatagattacaaaaaatattacatgttaataaa 292
Query: 120 accattgtttcccataaaagtgtctgcaggttttagctaagtgaattattaatatcttca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 accattgtttcccataaaagtgtctgcaggttttagctaagtgaattattaatatcttca 352
Query: 180 tagcaggctgttatgtcttatgtgggaaatgacagctggttcccctttgatgagcacatc 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tagcaggttgttatgtcttatgtgggaaatgacagctggttcccctttgatgagcacatc 412
Query: 240 tccttctgagaattatgaggtctgttttaaaagctccccatgtttgacagattaaaacat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tccttctgagaattatgaggtctgttttaaaagctccccatgtttgacagattaaaacat 472
Query: 300 tgggagtctgaggatttatctcatgtggcgtagtgctttattgccaactaaagctgtgtt 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 473 tgggagtctgaggatttatctcatgtggcgtagtgctttattgccaactaaatttgtgtt 532
Query: 360 ggtacgtctaatagaaccaccaattttcagtcctatacagtttctttcccttttcaaaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ggtacgtctaatagaaccaccaattttcagtcctatacagtttctttcccttttcaaaga 592
Query: 420 ctacattgagtatataaaacagtgtgtttt-----------ttttacaaaca------ca 462
|||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 593 ctacattgagtatataaaacagtgtgttttggtatgatattttttacaaacaaacaaaca 652
Query: 463 cacacacaca----------cacacacacacacacacacacacacacacacgaatataga 512
|||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct: 653 cacacacacatacacacacacacacacacacacacacacacacacacacacgtatataca 712
Query: 513 gcggtttgatcccagtcaggattgttttatttatgatgctcattgtcagactaagtcaat 572
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 713 gtggtttgatcccagtcaggattgttttatttatgatgctccttgtcagactaagtcaat 772
Query: 573 tctccctgacctatatctttctcttgtctgtttcttttcaagtaaatgaaataattatat 632
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tcttcctgacctacatctttctcttgtctgtttcttttcaagtaaatgaaataattatat 832
Query: 633 ctctgtaaaaaattgcaaatcatttttctttgct 666
||||||||||||||||||||||||||||||||||
Sbjct: 833 ctctgtaaaaaattgcaaatcatttttctttgct 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
