Query= MSMg01no328_k22.b1 MSMg01no328_k22.b1 CHROMAT_FILE:
MSMg01no328_k22.b1 PHD_FILE: MSMg01no328_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:54 2005
(595 letters)
>mm_chr6_39499835_39500829
Length = 995
Score = 1106 bits (572), Expect = 0.0
Identities = 594/610 (97%), Gaps = 15/610 (2%)
Strand = Plus / Plus
Query: 1 gggacaagtgaagtacgacgataggtaatatgtataatttttaaagagaccatcagaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gggacaagtgaagtacgacgataggtaatatgtataatttttaaagagaccatcagaact 245
Query: 61 tcattttcacaggagcgactgtgcacaaatgct--------------tgggctttgagat 106
||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 246 tcattttcacaggagtgactgtgcacaaatgctatttaataagtgcttgggctttgagat 305
Query: 107 cctctt-gagccagcaattccacttttaagaatttagctgacaggaatattagagccagg 165
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cctctttgagccagcaattccacttttaagaatttagctgacaggaatattagagccagg 365
Query: 166 acttgtggcaacatcatttgcagtaactaaaattgaaccataattgatagcttgctcaaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acttgtggcaacatcatttgcagtaactaaaattgaaccataattgatagcttgctcaaa 425
Query: 226 ttaacttaaacagaggcaccgcaggcagctgttaaaaagaaggctgttgggggctggaga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttaacttaaacagaggcaccgcaggcagctgttaaaaagaaggctgttgggggctggaga 485
Query: 286 gatggctcagcagttaagagcactggctgctcttcctagaggtcccgagttcaattccca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gatggctcagcagttaagagcactggctgctcttcctagaggtcccgagttcaattccca 545
Query: 346 gcaaccacatggtagctcacaaccacctgtaatggagtctgatgccctcttctagtgtgt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gcaaccacatggtagctcacaaccacctgtaatggagtctgatgccctcttctagtgtgt 605
Query: 406 atgaagacatatacttaaattaaataaatttttttttaaaaaaagaaggctgttaagtga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atgaagacatatacttaaattaaataaatttttttttaaaaaaagaaggctgttaagtga 665
Query: 466 aattattcttataaaatgttgttatattgtgatactgttacagaaatgttccattttgac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aattattcttataaaatgttgttatattgtgatactgttacagaaatgttccattttgac 725
Query: 526 acacacacacatacatatacatacgtatacatacacacacacacacacacacatataaca 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 acacacacacatacatatacatacgtatacatacacacacacacacacacacatataaca 785
Query: 586 tattatacac 595
||||||||||
Sbjct: 786 tattatacac 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no328_k22.g1 MSMg01no328_k22.g1 CHROMAT_FILE:
MSMg01no328_k22.g1 PHD_FILE: MSMg01no328_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:54 2005
(606 letters)
>mm_chr6_39683957_39684965
Length = 1009
Score = 1023 bits (529), Expect = 0.0
Identities = 549/557 (98%), Gaps = 4/557 (0%)
Strand = Plus / Minus
Query: 1 cttattacctgtgaactatgatgtaaaacaatccataccgaagtgtcagaaaatactttg 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 557 cttattacctgtgaactatgatgtaaaacaatccataccgaagtatcagaaaatactttg 498
Query: 61 actttcaaccatacatgttcaaaaaaattaagaaaaaacaaaggattgattgataaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 actttcaaccatacatgttcaaaaaaattaagaaaaaacaaaggattgattgataaggaa 438
Query: 121 ttcaccttaggcattataactcaagaaggctatttaatagagtgatagtagtgacataca 180
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 437 ttcaccttaggcattataactcaagaaggctatttaatagagtaatagtagtgacacaca 378
Query: 181 cagcagaaatgcc---cagagcattccttagaaactcgccagatttccataagtgtgtat 237
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cagcagaaatgcctgtcagagcattccttagaaactcgccagatttccataagtgtgtat 318
Query: 238 ttgtataacttcttttgaaaatttcaaatgtacagaaatggtaaaaaggaaacagcagta 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttgtataacttcttttgaaaatttcaaatgtacagaaatggtaaaaaggaaacagcagta 258
Query: 298 taaagattgctatattctttacttagttccccagttgctaacatctgttatatttctttt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 taaagattgctatattctttacttagttccccagttgctaacatctgttatatttctttt 198
Query: 358 tatttgttcagtttgtaacaaggtctcatagagcctaggctagtcttgaactttctctgt 417
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 197 tatttgttcagtttgtaacaaggtctcatagagcccaggctagtcttgaactttctctgt 138
Query: 418 agctaaacctggccttgagctgatcctcctgcctccatcttccaagtgctggattccaga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 agctaaacctggccttgagctgatcctcctgcctccatcttccaagtgctggattccaga 78
Query: 478 catgtgtcatcgtatccaaaggatgttctctttatcaa-ttttttctgaccaatttaaag 536
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 77 catgtgtcatcgtatccaaaggatgttctctttatcaatttttttctgaccaatttaaag 18
Query: 537 taagtagaagacttact 553
|||||||||||||||||
Sbjct: 17 taagtagaagacttact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1009
Length adjustment: 10
Effective length of query: 596
Effective length of database: 999
Effective search space: 595404
Effective search space used: 595404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
