BAC Information

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BAC

Clone NameMSMg01-328N13
Chromosome6 (Build37)
Map Location 48,945,701 - 49,111,437
singlet/doubletdoublet
Overlap geneGpnmb, LOC666011, Igf2bp3
Upstream geneZfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1
Downstream geneLOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328N13.T7 (MSMg01no328_n13.b1)MSMg01-328N13.TJ (MSMg01no328_n13.g1)
ACCAG445836AG445837
length782740
length of high quality
(start - end)
264 (66 - 329)340 (71 - 410)
definitionCHROMAT_FILE: MSMg01no328_n13.b1 PHD_FILE: MSMg01no328_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:06 2005CHROMAT_FILE: MSMg01no328_n13.g1 PHD_FILE: MSMg01no328_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,945,701 - 48,945,949)(49,111,098 - 49,111,437)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAGACCGCGGAATTCA
TGCTCTTTCTGCCGGCCTCTTGGCTTTGGGTTTACCAAGATTCCCCTGTC
TCACCCACTCTTAGATGGACCCTGAAAGCCTGGAGCCCTGTGATCCCCTG
ATCAATTACAGGGGCTCAGCAAGGCTAGTCGAGGAGCAAGACAAGGAGAG
AGAGATGTTCCCAGAGCACATGATGTCCATGGAGCCAAACAACCATAATG
ATCCACAGGTAGGAGAATTGGAGAATGTAAAAGGATTCTCAGACCAGCCT
TGGCAGTGATCATCATGTTCAGCAGACACAGGACAGAAGAGCTGGGGCTC
CCACAGCTCACAGGTGATGGGGCAGGGGCAGCACACACCTTCACTGCTAC
AGTCTGACCCCCCCCCCCCTGCAGACTAAATACCAACGTGCCGAGGCGCC
TTGAGTATGATGTGAACTGAGACAGGTCCAGGACCAAGACAGGATGTCCC
TTGGTGAGTCAGGATTTTAGCTATATTTTGACATGGTGTTGATTATACCT
CCCGTTACAATATTCAACGGTAGATTGTCATTTTTGCATTTATTTCCTTT
CCTTCCTCCCTACTTTCGCACTCCTTCTCGTCCCCTTTACTCCTGTCGTT
CCTTCACCTTTCGGTGGTTACTCCCTTTTGACTCGCACTTCTGTACCCTC
TCTTTTTTCTTTATTCATTATATCCCTGCCCCTGTTTCTCTCCCACCCCT
TAATGATCACATTCTACCCTAGTTTTTACTCC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTCTCTAGCCCAAGCTGGCCTCCAACTCA
CAGCAATCCATCAGTCTCTGCCTCCATAGTGCTGGGATCAAAGGTGTGTG
CACCTGGAGAGGCCGGAGGACACCTTGTAGCATTTGTTCTTCTTCTTCCA
TGTGGGCCCCACAGCTCTGCTTCACCTTGGGTGAAGAGTTGGTAAGAATT
CTTGGATTTCTTCTTTCCTTACCTGCCATGGTTATTGGCATTAAACTCGG
AACCTGGTGCTTTTTAGATAATATATAGTTTTCTATCACTGAGCTATGTC
CCCATCCCTGGTGATAGTCTCTGAAAAATTGGTTTGCTTTATGAAGTTAA
TCAATAGAGAGGCACGCTTTGTCACATTCTTTCATTAGTCTTTATAATTC
TATGGAATCTGAGGAGGTTTCTCAACTTTCGCACTGCTCATTCCAGTGTC
TTAAATCTGTCTTGCTAGAGGCTTTTTAGATGATTTTATGTGCAGTAATG
TCTACCTATGTATATGCATGAGTACTGTGGGTATTCTTAGTGTCTACCAG
ATCTTCAGAATAATGTGCTGGATCCTCTGTAACGTCTGAGACTCGTCATG
CGTTCTTCCGCTTTTTTGACCTCGTTTCTCTCTTGCTTCGATTATTTTAT
CGCCCATAACCCTGTCCTCTAACCTCATTCTCCGCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_n13.b1 MSMg01no328_n13.b1 CHROMAT_FILE:
MSMg01no328_n13.b1 PHD_FILE: MSMg01no328_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:06 2005
         (264 letters)



>mm_chr6_48945501_48946164
          Length = 664

 Score =  443 bits (229), Expect = e-129
 Identities = 244/249 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcttggctttgggtttaccaagattcccctgtctcacccactcttagatggaccctga 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 cctcttggctttgggtttaccaagattcccctgtctcactcactcttagatggaccctga 260

                                                                       
Query: 61  aagcctggagccctgtgatcccctgatcaattacaggggctcagcaaggctagtcgagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcctggagccctgtgatcccctgatcaattacaggggctcagcaaggctagtcgagga 320

                                                                       
Query: 121 gcaagacaaggagagagagatgttcccagagcacatgatgtccatggagccaaacaacca 180
           |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 gcaagacaaggagagagagacgttcccagagcacatgatgtccgtggagccaaacaacca 380

                                                                       
Query: 181 taatgatccacaggtaggagaattggagaatgtaaaaggattctcagaccagccttggca 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 tgatgatccacaggtaggagaattggagaatgtaaaaggattctcagaccagccttggcc 440

                    
Query: 241 gtgatcatc 249
           |||||||||
Sbjct: 441 gtgatcatc 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no328_n13.g1 MSMg01no328_n13.g1 CHROMAT_FILE:
MSMg01no328_n13.g1 PHD_FILE: MSMg01no328_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:07 2005
         (340 letters)



>mm_chr6_49110817_49111556
          Length = 740

 Score =  642 bits (332), Expect = 0.0
 Identities = 338/340 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctctagcccaagctggcctccaactcacagcaatccatcagtctctgcctccatagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 621 attctctagcccaagctggcctccaactcacagcaatccatcagtctcagtctccatagt 562

                                                                       
Query: 61  gctgggatcaaaggtgtgtgcacctggagaggccggaggacaccttgtagcatttgttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgggatcaaaggtgtgtgcacctggagaggccggaggacaccttgtagcatttgttct 502

                                                                       
Query: 121 tcttcttccatgtgggccccacagctctgcttcaccttgggtgaagagttggtaagaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttcttccatgtgggccccacagctctgcttcaccttgggtgaagagttggtaagaatt 442

                                                                       
Query: 181 cttggatttcttctttccttacctgccatggttattggcattaaactcggaacctggtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttggatttcttctttccttacctgccatggttattggcattaaactcggaacctggtgc 382

                                                                       
Query: 241 tttttagataatatatagttttctatcactgagctatgtccccatccctggtgatagtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttagataatatatagttttctatcactgagctatgtccccatccctggtgatagtct 322

                                                   
Query: 301 ctgaaaaattggtttgctttatgaagttaatcaatagaga 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaaaaattggtttgctttatgaagttaatcaatagaga 282


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)