Query= MSMg01no328_p21.b1 MSMg01no328_p21.b1 CHROMAT_FILE:
MSMg01no328_p21.b1 PHD_FILE: MSMg01no328_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:18 2005
(533 letters)
>mm_chr6_102726036_102726968
Length = 933
Score = 984 bits (509), Expect = 0.0
Identities = 527/533 (98%)
Strand = Plus / Plus
Query: 1 gacaaaaaaattcagttttgaaaataaatactgagggcatgtttgaccaggggagctggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacaaaaaaattcagttttgaaaataaatactgagggcatgtttgaccaggggagctggc 260
Query: 61 ctggagcaatagtcagattgggaggtaccccaaacccccagaattttatcctgagactgg 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggagcaatagtcagattgagaggtaccccaaacccccagaattttatcctgagactgg 320
Query: 121 ggggagtaagggctactctcttcctgctctcagcctatataaccttgcccatgacctcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggagtaagggctactctcttcctgctctcagcctatataaccttgcccatgacctcta 380
Query: 181 cctgccctgcttctgaggacagtcacacagtctttggccaaattacagggctaaacctct 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 cctgccctgcttctgaggacagtcacatagtctttggccaaattacagggctaaacctct 440
Query: 241 aattctccaataataaccacccaagtagtttcttggaattcttcttcatgtaaatgaaat 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattctccaataagaaccacccaagtagtttcttggaattcttcttcatgtaaatgaaat 500
Query: 301 atttccagtacctcaactccatccaataaagtttcccgcctagaaatgcccacccattcc 360
||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||
Sbjct: 501 atttccagtacctcaactccatccaataaagtttcccacctagaaatgtctacccattcc 560
Query: 361 ccaaggtctacctagcccttattcatcccaaataaagttgagctgtcttactgaagcagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaaggtctacctagcccttattcatcccaaataaagttgagctgtcttactgaagcagt 620
Query: 421 ctgttcctgaaagccattccattatattcactgctgtccaaaccctgcccccaactctgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgttcctgaaagccattccattatattcactgctgtccaaaccctgcccccaactctgc 680
Query: 481 tcctctcacccttgtggacaagtgaataacaacctctgaggaagggtaaaccc 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcctctcacccttgtggacaagtgaataacaacctctgaggaagggtaaaccc 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no328_p21.g1 MSMg01no328_p21.g1 CHROMAT_FILE:
MSMg01no328_p21.g1 PHD_FILE: MSMg01no328_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:18 2005
(612 letters)
>mm_chr6_102866518_102867529
Length = 1012
Score = 1139 bits (589), Expect = 0.0
Identities = 607/614 (98%), Gaps = 3/614 (0%)
Strand = Plus / Minus
Query: 1 gcctggtctacagagtgagttccaggataacagtacagccagagctatacagagaaaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gcctggtctacagagtgagttccaggataacagtacagccagagctatacagagaaaccc 709
Query: 61 tgtcttgaaaaaccaaacc--aaaaaaaaaaaaaaaaatcagggagtcatggcgtggaca 118
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgtcttgaaaaaccaaaccaaaaaaaaaaaaaaaaaaatcagggagtcatggcgtggaca 649
Query: 119 tttccagaagtagtgttttttcttagtagctaactgataatgcactaaatacccagaaac 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 648 tttccagaagtagtgttttttcttagtagctaactgataatgcactaaatacccagcaac 589
Query: 179 ccacaggaaagagtaagctaagacagtatgtttcaattgatattgagcaatttttcaaca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ccacaggaaagagtaagctaagacagtatgtttcaattgatattgagcaatttttcaaca 529
Query: 239 ctagaggggagattttgactgatcaaagtcagtattactatcatctttgttaataataga 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ctagaggggagattttgactgatcaaagtcagtattactatcatctttgttaataataga 469
Query: 299 catggaaattaacaggattcaatcctgaccagtgaggtacaaaagagacctgctaagata 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 catggaaattaacaggattcaatcctgaccagtgaggtacaaaagagacctgctaagata 409
Query: 359 tgtcagatctttcttattttatttcattagaaggaattttgagtagtgatggccaatgga 418
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgtcggatctttcttattttatttcattagaaggaattttgagtagtgatggccaatgga 349
Query: 419 attccatctcctaacaattgaaagcaactgtgggagagtgtttctcttggagctgctgcg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 attccatctcctaacaattgaaagcaactgtgggagagtgtttctcttggagctgctgcg 289
Query: 479 gagttcctgataatataaatatacaattctatataatgttctatatataaaaaaaatagg 538
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 288 gagttcctgataatataaatatacaattctatataatgttctatatat-aaaaaaatagg 230
Query: 539 acattaatagttgcaagaagaanagatccaaaaccatatgaatcagtgttctcattttta 598
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 229 acattaatagttgcaagaagaaaagatccaaaaccatatgaatcagtgttctcattttta 170
Query: 599 gtctgctgaatttt 612
|||||||||||||
Sbjct: 169 atctgctgaatttt 156
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
