BAC Information

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BAC

Clone NameMSMg01-329D15
Chromosome6 (Build37)
Map Location 88,942,267 - 89,018,709
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175
Downstream gene4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329D15.T7 (MSMg01no329_d15.b1)MSMg01-329D15.TJ (MSMg01no329_d15.g1)
ACCAG446115AG446116
length788750
length of high quality
(start - end)		149 (46 - 194)452 (72 - 523)
definitionCHROMAT_FILE: MSMg01no329_d15.b1 PHD_FILE: MSMg01no329_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:36 2005CHROMAT_FILE: MSMg01no329_d15.g1 PHD_FILE: MSMg01no329_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,018,567 - 89,018,709)(88,942,267 - 88,942,718)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCGAGTTATCTAGAGAGTGTGTAGGTAGACTTGGGGTTGTGACTT
GAGCTATATGGAGAGTGTGAAGGTTGACTGGAAGTTGGGAATTGTGGGTT
ATACAAAGAGTGGGGAGGTTGAGTGGGGGTTGGNACTCTTGANTACTGCT
ACTGCCCGTAATTTTCTCTGGTGACTCCCTATTGTTTCAGCTTTTCATGA
TTCTCCCATGCGGTGACTGGAACTCCTCCATGCCCCACACGCGAGTCTCC
CCCACGACCCTCCCGCTTTCTTCACGCTTTGCCTCTCTGATGCTTCTGTC
TTCCCTCACTTACTCTCCCCGCTGGACCCTGCTCCTCATCCCTCCCTCGC
TTTGCCCTACCCCCCCCCCCCCTTTCCCCCGCACACCCCCCCCCCGCCCC
CTCTTCTGATCTCCTCGCCCTCTCTCTCTCCCCTCTTCCTTCTCCCTCTC
CCGTTCTCTCCCCCCGTCCCCCTTCCCCTTCTTTTCTCCTTCTCCCCCCC
CTCTTCTTTATCCCCCCCCTTTCTCTTTCCCTCCCTCTTTTTCCCCCTCC
CCCCCCTTTCCTTCCCCCCTCCCCCCCTCTTTTCTTCCCCTTCCCCTCTT
TCCCTTTTTCTCCCTTTCCTCCCCATCCCCCCCTTTCCTCCCCCCTTCCA
CTCCCTTTTTTCTTTTTCGCCCCATCCCCCCTTGCCCTTTCCCCCCCTTC
TCCTCCCCCTTTCTCCCCTCCCCCCCCCCTTCTCCTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCCCCGAGGAATTCTCTCCCAAAGCTTTTGTCACTGGAA
GCTGCTCAAGCCCACCAGAGTGAGTCACTTCCCACTCAGTCAAGGCCCGG
ACCTTGGCTCCTACCTGCTATGTCCTGCCAGCCCACTGCATCCCACCTAC
TCCAGGGCCTCCTGCTGTGTCCTGCTGCCTGCCATTGACAGCACTGACCA
CTGAGCTGCCCAGCAGCCTGCCTTGCTCTGGCTCCCCCTCAGAGAGCTGC
AACTCTATGGCCGCTCCACCAGGGCCAGAGCCCTGCAGATCCCCCACAGA
CAGTGCCCAGTGGGAATACTGGCAGTCCCCAGTTAGTAGTTGTTTCACTG
GATGAAGTATGCCACCGTGGGTTTCACTGGATGAAGTGTGTCACCATGGG
TTTCACTGGATGAAGTGTGCCACCGTACGTTTCACTGGATGAAGTATGTC
ACCGTGGGTTTCACTGGATGAAGCATGTCACTGTGGGTTTCACTGGATGA
ATTGTGTCACTGTGGTTCTCACTGCATGAATTGCGTCACTGTGCGTTTCA
CTGGATGAAGTGTGCCACTGTGTTTCTTACTGCATGGATATATGCCACCT
CCCGTACCACCGGTATTACTTACGCCCCTTTATACTTTTAATTAACTCAT
ATATCCCCTTTTTCACCTACTATATCTCTTTTTTCTCCATCATCTTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_d15.b1 MSMg01no329_d15.b1 CHROMAT_FILE:
MSMg01no329_d15.b1 PHD_FILE: MSMg01no329_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:36 2005
         (149 letters)



>mm_chr6_89018363_89018911
          Length = 549

 Score =  255 bits (132), Expect = 7e-73
 Identities = 140/143 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcgagttatctagagagtgtgtaggtagacttggggttgtgacttgagctatat 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gaattctcgagttatatagagagtgtgtaggtagacttggggttgtgacttgagctatat 288

                                                                       
Query: 65  ggagagtgtgaaggttgactggaagttgggaattgtgggttatacaaagagtggggaggt 124
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 287 ggagagtgtgaaggttgactggaagttgggaattgtgggttatacagagagtggggaggt 228

                                  
Query: 125 tgagtgggggttggnactcttga 147
           |||||||||||||| ||||||||
Sbjct: 227 tgagtgggggttgggactcttga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space:    76281
Effective search space used:    76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no329_d15.g1 MSMg01no329_d15.g1 CHROMAT_FILE:
MSMg01no329_d15.g1 PHD_FILE: MSMg01no329_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:36 2005
         (452 letters)



>mm_chr6_88942125_88942976
          Length = 852

 Score =  804 bits (416), Expect = 0.0
 Identities = 443/452 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctctcccaaagcttttgtcactggaagctgctcaagcccaccagagtgagtcacttc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 143 attctctcccaaagcttttgtcactggaagctgctcaagcccaccagagtgactcacttc 202

                                                                       
Query: 61  ccactcagtcaaggcccggaccttggctcctacctgctatgtcctgccagcccactgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ccactcagtcaaggcccggaccttggctcctacctgctatgtcctgccagcccactgcat 262

                                                                       
Query: 121 cccacctactccagggcctcctgctgtgtcctgctgcctgccattgacagcactgaccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cccacctactccagggcctcctgctgtgtcctgctgcctgccattgacagcactgaccac 322

                                                                       
Query: 181 tgagctgcccagcagcctgccttgctctggctccccctcagagagctgcaactctatggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgagctgcccagcagcctgccttgctctggctccccctcagagagctgcaactctatggc 382

                                                                       
Query: 241 cgctccaccagggccagagccctgcagatcccccacagacagtgcccagtgggaatactg 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 383 cgctccaccagggccagagccctgcagatcccctacagacagtgcccagtgggaatactg 442

                                                                       
Query: 301 gcagtccccagttagtagttgtttcactggatgaagtatgccaccgtgggtttcactgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcagtccccagttagtagttgtttcactggatgaagtatgccaccgtgggtttcactgga 502

                                                                       
Query: 361 tgaagtgtgtcaccatgggtttcactggatgaagtgtgccaccgtacgtttcactggatg 420
           |||||| ||||||| |||||||||||||||||||| |||||||||  |||||||||||||
Sbjct: 503 tgaagtatgtcaccgtgggtttcactggatgaagtatgccaccgtgggtttcactggatg 562

                                           
Query: 421 aagtatgtcaccgtgggtttcactggatgaag 452
           |||| |||||| ||||||||||||||||||||
Sbjct: 563 aagtgtgtcactgtgggtttcactggatgaag 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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