Query= MSMg01no329_f02.b1 MSMg01no329_f02.b1 CHROMAT_FILE:
MSMg01no329_f02.b1 PHD_FILE: MSMg01no329_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:43 2005
(308 letters)
>mm_chr6_5871469_5872178
Length = 710
Score = 543 bits (281), Expect = e-159
Identities = 299/305 (98%), Gaps = 2/305 (0%)
Strand = Plus / Plus
Query: 6 gaattcagaggtaatacc-cacaataacagcaagaacaccctcgtactaatactcaagga 64
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcagaggtaaaacaacacaataacagcaagaacaccctcgtactaatactcaagga 265
Query: 65 cactgcagagaaaagaacataatacaactgaacaaatgttttaataggggcatcaaatca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cactgcagagaaaagaacataatacaactgaacaaatgttttaataggggcatcaaatca 325
Query: 125 aggatgctaagaggcaagcgagggataaatggttagaattacctagaggacttggtatct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aggatgctaagaggcaagcgagggataaatggttagaattacctagaggacttggtatct 385
Query: 185 ttattcagtctcaaatgtagtgagataaacaacacaga-ggggcttccagtgggcatgtg 243
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 386 ttattcagtctcaaatgcagtgagataaacaacacagaaggggcttccagtgggcatgtg 445
Query: 244 atcataatcataggtacagaggtagcagctatgtgcttcatggttagctggtaagtctgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atcataatcataggtacagaggtagcagctatgtgcttcatggttagctggtaagtctgg 505
Query: 304 ttaca 308
||||
Sbjct: 506 gtaca 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 710
Length adjustment: 9
Effective length of query: 299
Effective length of database: 701
Effective search space: 209599
Effective search space used: 209599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_f02.g1 MSMg01no329_f02.g1 CHROMAT_FILE:
MSMg01no329_f02.g1 PHD_FILE: MSMg01no329_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:43 2005
(368 letters)
>mm_chr6_6040638_6041405
Length = 768
Score = 630 bits (326), Expect = 0.0
Identities = 359/372 (96%), Gaps = 8/372 (2%)
Strand = Plus / Minus
Query: 1 tccaaagccagccggccagccagaccagctgaaactagccaaagactcagccttggtaag 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tccaaagccagcc-gccagccagaccagctgaaactagccaaagactcagccttggtaag 510
Query: 61 aaagggacaacaagactaaggaaggcaccggacttctatgtcaggcctccacattgcatg 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 509 aaagggacaacaagactaaggaaggcactggacttctatgtcaggcctccacattgcatg 450
Query: 121 tgcacataactcttgtaactgcacacagatgtgcctgtgtgtgcatctgcagacgacagg 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgcacttaactcttgtaactgcacacagatgtgcctgtgtgtgcatctgcagacgacagg 390
Query: 181 agagcatgattggaaaggtaggagctgtaatctagttactctctctggtg---aggtcag 237
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 389 agagcatgattggaaaggtaggagctgtaatctagttactctctctg--gcaaaggtcag 332
Query: 238 agcccatgctattcctgcttgtatttctactttctttttcttctgtggttctagggaagg 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 -gcccatgctattcctgcttgtatttctactttctttttcttctgtggttctagggaagg 273
Query: 298 ataagccgagggccttgcgtc-tggtgtgcaagccctgaactgtatctcacccccccgtt 356
||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct: 272 ataagccgagggccttgcgtcttggtgtgcaagccctgaactgtatctcacaacctcgtt 213
Query: 357 tttttcccccgt 368
||||||||||||
Sbjct: 212 tttttcccccgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space: 272481
Effective search space used: 272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
