BAC Information

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BAC

Clone NameMSMg01-330D18
Chromosome6 (Build37)
Map Location 38,835,801 - 38,836,090
singlet/doubletsinglet
Overlap genenone
Upstream geneTrim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2
Downstream geneTbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330D18.T7 (MSMg01no330_d18.b1)MSMg01-330D18.TJ (MSMg01no330_d18.g1)
ACCAG446845AG446846
length793743
length of high quality
(start - end)
78 (163 - 240)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no330_d18.b1 PHD_FILE: MSMg01no330_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:54 2005CHROMAT_FILE: MSMg01no330_d18.g1 PHD_FILE: MSMg01no330_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATTTGCGGCGCTAAACGATCACTATTTCCCGACCCGCNCGGAANNCNN
GAGAGTTACCCCACCNGGGGAAGAAAAAANAANAAACAGGGAAGNANCNA
NAGAGATTTTTCACCAGAACCAAGGGNAGANAAGGAGAAGGNAAANNNGC
CAAAGGNNAAANAAGAAGAANCCATTTCCCCTTAGTTTAGGCGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTTTGT
ATGGACACCAAGTGTGTAGCTGGTCTTGGATGCTTTGGACCCTTGAGGCA
GACAGCTTTTTTATAATTTTGTCGAAAGCGCCGGGAACAGGGCACGAAAA
TTTTTTTTCTTCTCCCCCCCCCCCCCCCAAAAAAANAAGNAGGGNANNGG
NNNNNNANGNNNNNNAGAAAAAAGGAGNAAAAAAAANGGGGGGGGGGGGG
GGGGGGNNNNNAAGGAAAAAAGAAAAGANGNAGGAAAAAAAGAGAGGGAA
AAGAGAGAAAAAAGAAAAAANAAAAAAAAAGGGGGAAAAAAAAGAAAAAA
AAAAAAAGAGAGAAAAAAAAAAAAGAAAAGAGAAAGGAAAAAAAGAAAGG
AAAGAAAAGAAAGAAAAAAGGGGAAAAAAAAAAAGAAGAGAAAAAGAGAG
GAGAGAGAGGAAAAAAGGGAGAAGAAGGAAGAGAGAAAAAGTTTTTTTTT
TTTTTAAAGGGAAGAGGGGATGAGGTTTAAAAGTATAATTTTATATTATG
TTATGGAATAATAAATATTATATTGTGGAGTGTTTTTTTTTAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAAACACAGACAATAATAG
TGGGCTTTTGTCTCAACAAAATGAACCACGAGCCTTTGGATGTTAAGTAC
TTTGAGGGTAGAGAAGGTGACGAAGCTTGAGGGGTGACATGACCTGGTAA
GCAACAAGATGTCACCACAGGACAGCCGACTCTGAGCCAGGCAGGCAATG
GCTTGAGGATGGCCAGAGAAAGAATGTTTTAGAAACTTTGGCCCTGGGGC
ATTACAGGTGATGCCTTTCCTGTCCACCACATTTAACAATCTGTTTTTAT
TACCCCTGCTATCCTCTATTTGTTCCCCCCCCCCCCTTCCTACTATTTGT
AACCCTTGTTTTGTTTTGAGAGAAAGGGTCTCAGACAGAGCTCTGTCTTG
AACTCTGTATAGCTATGGATAACTCTGAGTTCCTGATCTTCTGGGTGCTG
GGATTACAAACTTCACAGAGATACTTTTAAGTGAGGGATATATCAGGTAT
AGTATGGTTGCAAAAGAAACTAAGTCTATTGACATAGCTTACTAAGTATC
TGTTTATCGATACACTTATAAACTAGATCTATCCTGATGCCCAATAACTT
CATAGCATTTACTGAGTATAAACAAAAGTTTCAAGATGTCCGGTAACAGT
CGGCCTACAGATATTTTTAAAAACCTGTTTATTGGTTGGCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_d18.g1 MSMg01no330_d18.g1 CHROMAT_FILE:
MSMg01no330_d18.g1 PHD_FILE: MSMg01no330_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:54 2005
         (290 letters)



>mm_chr6_38835601_38836290
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccaaacacagacaataatagtgggcttttgtctcaacaaaatgaaccacgagcctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 caggccaaacacagacaataatagtgggcttttgtctcaacaaaatgaaaaacgagcctt 260

                                                                       
Query: 61  tggatgttaagtactttgagggtagagaaggtgacgaagcttgaggggtgacatgacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggatgttaagtactttgagggtagagaaggtgacgaagcttgaggggtgacatgacctg 320

                                                                       
Query: 121 gtaagcaacaagatgtcaccacaggacagccgactctgagccaggcaggcaatggcttga 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 gtaagcaacaagatgtcaccacaggacagctgactctgagccaggcaggcaatggcttga 380

                                                                       
Query: 181 ggatggccagagaaagaatgttttagaaactttggccctggggcattacaggtgatgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatggccagagaaagaatgttttagaaactttggccctggggcattacaggtgatgcct 440

                                                             
Query: 241 ttcctgtccaccacatttaacaatctgtttttattacccctgctatcctc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcctgtccaccacatttaacaatctgtttttattacccctgctatcctc 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)