BAC Information

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BAC

Clone NameMSMg01-330E20
Chromosome6 (Build37)
Map Location 90,637,403 - 90,637,714
singlet/doubletsinglet
Overlap geneIqsec1
Upstream geneV1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3
Downstream geneLOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3, Slc6a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330E20.T7 (MSMg01no330_e20.b1)MSMg01-330E20.TJ (MSMg01no330_e20.g1)
ACCAG446897AG446898
length753755
length of high quality
(start - end)
321 (46 - 366)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no330_e20.b1 PHD_FILE: MSMg01no330_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:59 2005CHROMAT_FILE: MSMg01no330_e20.g1 PHD_FILE: MSMg01no330_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACTGAGAAGGCGCTGGGACAGTCCATATAGTGTCATGCTTCCAG
AGACATAAAGAGGCTGAATCTATGCCCAAATAAATAGGGCCCACTAGCCA
GCCAGCCTAGCTAAATCACTGACTTCCAGGGTTAGAGACTCCAGCCCAGA
GAGTAAGATGAAGAATGCAAGAGGACACATGACATCAACCCCTGGTCCCT
ACCCCATGTGGCACACAGGAATGAAGGACCATATAAGTAGCAAGCAAGAC
TTTCAACAGCCAGCCATTATGAAGTCCTAGGTCAAAGTCATCTAGCACAG
GCCAAAAGTGATGATTGGTAGGTCAACCAATCGNACCGCATATGTTTGTC
CTTGTACTCTTCATGTACCAAGCTTGCATGAATACAGACTGGAAGGTGGC
GACGTCAGTACCAGCCTTGTTTCACAGATGTGAAAAACACAAAATAGGCC
CACAGACAAAAAGACCTGGATAGACTTGGGGAGACAGTTCAGTCATCAAA
GAGCTTGCTACATAATTACAGGGACCTGAGTTTGATGCTCAGCATCCATG
CAAAAAGCCGACCATCCCAGTCTTGGGGAGGCAGAAACAGGAGGACTAAC
CCTAACCCTAAACCTACGGCTTACTAGCCAGCCAACCTAGCTGAATCACT
GACTTCAAGGGTTAGTTAGAGACCCTATCTCAAACATAAGGTGAAGAATG
AAA
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCAGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACACCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATATCTCTCTTTTTTTTATATCCCCCCCACCCCCAACAGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAAACATATATATAATAGCCAGA
AGCTGGAAAGAACCTATATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCATACACCATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAA
CTGGATATTAGCCCCAAACCTAGGATACCCAAGATACAAGATATAATTTG
CTACACACATGAAACTCAAGAAGAATGAATACCGAAGTGTGGACACTTAT
GCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_e20.b1 MSMg01no330_e20.b1 CHROMAT_FILE:
MSMg01no330_e20.b1 PHD_FILE: MSMg01no330_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:59 2005
         (321 letters)



>mm_chr6_90637199_90637919
          Length = 721

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactgagaaggcgctgggacagtccatatagtgtcatgcttccagagacataaa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactgagaaggtgctgggacagtccatatagtgtcatgcttccagagacataaa 264

                                                                       
Query: 65  gaggctgaatctatgcccaaataaatagggcccactagccagccagcctagctaaatcac 124
           ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaggctgaagcaatggccaaataaatagggcccactagccagccagcctagctaaatcac 324

                                                                       
Query: 125 tgacttccagggttagagactccagcccagagagtaagatgaagaatgcaagaggacaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgacttccagggttagagactccagcccagagagtaagatgaagaatgcaagaggacaca 384

                                                                       
Query: 185 tgacatcaacccctggtccctaccccatgtggcacacaggaatgaaggaccatataagta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgacatcaacccctggtccctaccccatgtggcacacaggaatgaaggaccatataagta 444

                                                                       
Query: 245 gcaagcaagactttcaacagccagccattatgaagtcctaggtcaaagtcatctagcaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcaagcaagactttcaacagccagccattatgaagtcctaggtcaaagtcatctagcaca 504

                       
Query: 305 ggccaaaagtga 316
           ||||||||||||
Sbjct: 505 ggccaaaagtga 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)