BAC Information

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BAC

Clone NameMSMg01-330K03
Chromosome6 (Build37)
Map Location 14,034,270 - 14,034,587
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043
Downstream geneLOC100040513, LOC667797, Ppp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330K03.T7 (MSMg01no330_k03.b1)MSMg01-330K03.TJ (MSMg01no330_k03.g1)
ACCAG447136AG447137
length779787
length of high quality
(start - end)
325 (39 - 363)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no330_k03.b1 PHD_FILE: MSMg01no330_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:23 2005CHROMAT_FILE: MSMg01no330_k03.g1 PHD_FILE: MSMg01no330_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCT
CTCAGTTTTGCCCAAAAGAACTTATGCATGGATTGTATTAAAGAATTAAC
TGAGCATCTTCCATTATTTCCTTATTCATTAGAAATACTTTTACATACAA
TGTTTTAATAATTCCCATATCTGCCCTTTTAAATGCAAACCACCCAAAAC
AGAACCTAATGCAGTCTGCACAGCTAGGATCCAGAAGAAGAAGAAGGGGA
ACTTTGAACTTCAGGATGTTTCCAAGTTCCATTTTAGTAATACAGAGTAT
CATGATCTTTGGGGCACAAATATTGACAAGGTAAAGAGCCAAGAATAGTA
TCAAAACCTGTTTTTTCTATATCCCACCCACCCATATTGAGGAAAATTAA
AGACAAGAGATTAAAAATCTTTGGCTATCTTAATATATAATAAAGATGTA
CAACTTCCAAGTGAAGCAATGCCAGCAGTAGAGAAATGGCTTGAACAGCA
AAGACAGGTTGCTTTATACATAATTTCAAAGAAAGCCATATATTGTATTT
ATTTTAAATGTTTATTAAATATTTTTTATATCAAATGTTATCCTCTTTCT
TCATTTCCTCTCTGAAAACTCCTTATCCCCACCTCCTCCTACCTACCTCC
TTGTTTATCTATCCATCCAATTACCGGCTTTATAATTTAGGAATTACCCC
TACAATTGTGTCTTTCTTTTCTTTTCTTGCGACTTATTGAACCCTCCTCA
CTCCATTTAAATTCCTACTTATAGTCATN
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTTCCCCACTT
TTTAATAGGGTTATTTGGTTCTCTGGACCCTAACTTTATTGAGATCTTTG
CATATATTGGATATTAGCCTGTCATTGGATATAGGATTTGTAGAGCTCTT
TTCCCAATCTGTGGGTGCCATTTTGTCCTATTGACAGTGTCCTTTGCCTT
ACAGAAGCTTTGCAGTTTTATAAGGTCCCATTTGTTAATTTTTGATCTTA
CAGCACAAGCCATTGGTGTTCTGTTCAGGAATTTTCCCCTTGTGCCCATA
TCTTGAAGGCGTTTCCCTTCNTTCNCTCCCCTCAACTTNACCGTCTCTGG
TTTAATGTTGAGGTCCTTGATCGACTTGGACTTGAGAAAAAAAACAGGGA
GATGAGAATGGATTAATTTGAATCCTTCTACATGTTGACTACCAGTTGAA
CAAGCACCATTTTATTGAAAATTCTGTCTATTTTTCCACTGGATGGTTTT
AGCTCCTTTTGTCAAATCAAGTGACTATAGGTGTGGTGATTCATTTCTGG
GTCTTTAGTTCTAATCCACTGAACTACCTAACTATTTCTGTACCATTACC
ATGAAAATTTTTATCACAATTGCTCCTGTAGTACAGCTTTAACATCAGGG
GATGGACGATTACCCCCCAAAGTTCTTTTTATTGTTGGAGAATAGTTTTT
CACTAATCCCTGAGGTTTTTTTGGTTATTCCCAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_k03.b1 MSMg01no330_k03.b1 CHROMAT_FILE:
MSMg01no330_k03.b1 PHD_FILE: MSMg01no330_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:23 2005
         (325 letters)



>mm_chr6_14034065_14034789
          Length = 725

 Score =  540 bits (279), Expect = e-158
 Identities = 309/319 (96%), Gaps = 2/319 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctctcagttttgcccaaaag-aacttatgcatggattgtattaaagaattaactg 64
           ||||||||||||||| |  || ||| || ||||||||||||||||||| |||||||||||
Sbjct: 523 gaattctctcagtttagttcagaagtaa-ttatgcatggattgtattacagaattaactg 465

                                                                       
Query: 65  agcatcttccattatttccttattcattagaaatacttttacatacaatgttttaataat 124
           ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 agcatcttccaatagttctttattcattagaaatacttttacatacaatgttttaataat 405

                                                                       
Query: 125 tcccatatctgcccttttaaatgcaaaccacccaaaacagaacctaatgcagtctgcaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tcccatatctgcccttttaaatgcaaaccacccaaaacagaacctaatgcagtctgcaca 345

                                                                       
Query: 185 gctaggatccagaagaagaagaaggggaactttgaacttcaggatgtttccaagttccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gctaggatccagaagaagaagaaggggaactttgaacttcaggatgtttccaagttccat 285

                                                                       
Query: 245 tttagtaatacagagtatcatgatctttggggcacaaatattgacaaggtaaagagccaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tttagtaatacagagtatcatgatctttggggcacaaatattgacaaggtaaagagccaa 225

                              
Query: 305 gaatagtatcaaaacctgt 323
           |||||||||||||||||||
Sbjct: 224 gaatagtatcaaaacctgt 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)