BAC Information

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BAC

Clone NameMSMg01-330K21
Chromosome6 (Build37)
Map Location 39,739,902 - 39,887,162
singlet/doubletdoublet
Overlap geneMrps33, LOC665247, LOC665254
Upstream geneHipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2
Downstream geneEG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330K21.T7 (MSMg01no330_k21.b1)MSMg01-330K21.TJ (MSMg01no330_k21.g1)
ACCAG447170AG447171
length740821
length of high quality
(start - end)
246 (78 - 323)162 (173 - 334)
definitionCHROMAT_FILE: MSMg01no330_k21.b1 PHD_FILE: MSMg01no330_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:26 2005CHROMAT_FILE: MSMg01no330_k21.g1 PHD_FILE: MSMg01no330_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,886,917 - 39,887,162)(39,739,902 - 39,740,062)
sequence
AATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGATCCGC
GGAATTCTCTAGCAGTTGCAAAAAGACTTTTACAAACAACTTGTAGGTCT
ATAATCTTTTAGCTAATAGTTCTAACGCGACTAACACTGATTAACAGTAT
CTACAATCACTTGGGAGACAAAACTCGAGACATATGGAGAAATCCACCCG
AACTGTAGGTCATGTCATGCCATCCCGAGGGCTGAGCTCCTAGTGTAAGG
AAGCAGGAGAAAGCCAGTGGCAGGCTTCATCTGTCTGTTTGCTAAGCGCA
GCTGCAACACATCCAGCTGCCTCATGTTCTCACCTCTCAGGCTTCTCCAT
CATGGCCGACTTTATCTCTCTTAGCCACCTGCCAAGGTGTTTATTACAGC
AACAAGAGTAATAATGAGGATGAGTATTTATTGGAGGCATCACAGGGACA
GGCTTGTCACTGAGTGCTGAGACTGAGCCCCGATACTATCAAGTTCCTAT
TCTATAATAAATGGGATGGCACCAGGGGAAGAGGGTCAATAACCAAAAAG
TTTACATCAGATGATGTATAATGAGAAAATTATAGGGCCAACAATCAAAA
GGTAAAATTAGACCATGATTATGCACTCTGTTTGTACTTAAAGGTCATTG
TGCGTTTAAGTTTCTCCTAATTAAGGTAAGAAGCTGGAAGGCTAAGTGAT
GGGCCAATTTAAAAACTGAAGTTCAAGCTATGCTTATATA
TAAATTAATANTTTATATAAACCANTCAAAGAGAACNTAAAANNNNNNCC
AGATGCTATGAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCCAAAAAAAGGGNNNAAGNNAAAANAAGGGGNAGAG
AGNAGANAAGAAAATTTANACCCCTTTTCCATCCCTCTGNAATTTGGAGA
AAGCTTGTTTTGAGTATGATGGGTATGACATGCTACTTTCCTGTGCAACT
GTCCCTTGTTTGGCTCACCCTTGGGACTTTCTGTCTATTCAGATTCCATG
GTTTCTTTTGTGGAAGAATAGTATTTAGAAAGTGCTATTTAGGNCTAAGN
GGNATNNNNNNNNNNTTATTTTTTTTTCAAGGAAGNCAAAAGAGGCACAG
AAAAGATTTTTAATGATTCCCCCCCCCCCCCGANAGNGAAGAGGNNNNGG
AGAGNNAGGNGNANNNAAAAAAGGNGGAAAAGNAAAGGGGGGGGGGGGGG
GAGGNANNANNNGNNNGNNNAAAGAAGAAAANGAAAAAAAAAGAGGAAGA
AAAAAAAAAAAAGAAAAAAAAGAAGAAGAGGAAAAAGGAAAGAAGGAAAA
AGAAGAAAAAAAAGGAAAAAAAAAAAGGGGGAGAAAAAAAGAAAAGAGGA
GAAAAAANAAAAAAAAGAAAAAGAGAGAGAAAAAAAAAAAAAAAAAAAAG
AAAAAGGAAGAGGAGGAGAAAGATAATTTTTAATATGTAATATTGTAATA
TATTTTTTTATATTAATATATATGTTGATAAGAGGGATGAAAGATAGGGT
AATATATGTAGTTTAAGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_k21.b1 MSMg01no330_k21.b1 CHROMAT_FILE:
MSMg01no330_k21.b1 PHD_FILE: MSMg01no330_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:26 2005
         (246 letters)



>mm_chr6_39886855_39887500
          Length = 646

 Score =  422 bits (218), Expect = e-122
 Identities = 239/246 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttacaaacaacttgtaggtctataatcttttagctaatagttctaacgcgactaacac 60
           ||||||||||||||||| |||||||||||||||||||||||||||| | | |||||||| 
Sbjct: 308 ttttacaaacaacttgttggtctataatcttttagctaatagttcttatgtgactaacat 249

                                                                       
Query: 61  tgattaacagtatctacaatcacttgggagacaaaactcgagacatatggagaaatccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgattaacagtatctacaatcacttgggagacaaaactcgagacatatggagaaatccac 189

                                                                       
Query: 121 ccgaactgtaggtcatgtcatgccatcccgagggctgagctcctagtgtaaggaagcagg 180
           |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 188 ccgaactgcaggtcatgtcatgccatcccgcgggctgagctcctagtgtaaggaagcagg 129

                                                                       
Query: 181 agaaagccagtggcaggcttcatctgtctgtttgctaagcgcagctgcaacacatccagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 agaaagccagtggcaggcttcatctgtctgtttgctaagcgcagctgcaacacatccagc 69

                 
Query: 241 tgcctc 246
           ||||||
Sbjct: 68  tgcctc 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no330_k21.g1 MSMg01no330_k21.g1 CHROMAT_FILE:
MSMg01no330_k21.g1 PHD_FILE: MSMg01no330_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:26 2005
         (162 letters)



>mm_chr6_39739701_39740262
          Length = 562

 Score =  298 bits (154), Expect = 1e-85
 Identities = 159/161 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   cttttccatccctctgnaatttggagaaagcttgttttgagtatgatgggtatgacatgc 61
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cttttccatccctctgcaatttggagaaagcttgttttgagtatgatgggtatgacatgc 261

                                                                       
Query: 62  tactttcctgtgcaactgtcccttgtttggctcacccttgggactttctgtctattcaga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tactttcctgtgcaactgtcccttgtttggctcacccttgggactttctgtctattcaga 321

                                                    
Query: 122 ttccatggtttcttttgtggaagaatagtatttagaaagtg 162
           |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 322 ttccatggttccttttgtggaagaatagtatttagaaagtg 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)