BAC Information

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BAC

Clone NameMSMg01-330L16
Chromosome6 (Build37)
Map Location 78,230,599 - 78,230,764
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050
Downstream genePap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330L16.T7 (MSMg01no330_l16.b1)MSMg01-330L16.TJ (MSMg01no330_l16.g1)
ACCAG447207AG447208
length736713
length of high quality
(start - end)
45 (163 - 207)166 (443 - 608)
definitionCHROMAT_FILE: MSMg01no330_l16.b1 PHD_FILE: MSMg01no330_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:30 2005CHROMAT_FILE: MSMg01no330_l16.g1 PHD_FILE: MSMg01no330_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTATTTTTTCCAAGAACTGCTGAACTGTTTCCAGACAATTTGCTGA
TGCTGATGGATAGTCTTCCTTCCTGCTTTCCCACAGAATGCTGGTAAAAG
ACACAACATAGATGACCAATTATTTCACAACCCTGGTTTCATGACTTTGT
TTTTTGCGGAGCCTAATCACTTGTTTTCACATCTTTAATTGCAGTAACTT
TATAGGAAATATGGAAATGTACATTGGAAAGTCCTCCAACAAAATTACTC
ACTATCAGCATTGGTCTGGCTATTCTAGATCAATATTGCTATACCAACTT
TGATTCTCTTTTTTGTTTTCACCACCCCCCTGTCGATTTCTGTAAAAGGA
ATAAGTTTATGGAACTCTTGATATAAAAAAAAACAATTTACACAGTCCAC
TCTTTGCCTGCCCTTCTGGTCTATATACAGACATCTTACTATATTTTTAT
CTCTAGAACTTTTGTGGCTTTTGATTGATGTGATTTCTGCTTAATTTTCA
ACTTGAAATTTTTAGGATTTTGTTTACATTTCCTCCTCTCCTCCTTTTTC
TCCAATTCTGCCCATGTTCCTCCGTACCTTTTCAAATTCATCATTCCTTC
AATTATCAATGTTGCATATACACACATGCGTACAATTGTGTGCAAATGTG
CGTGTGCGCGAGTCTGTGTTATCCCATTCTGCAAGT
NCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTCATATCAGGGTCT
AGAATGTGAGGACTCGAGACAGATTTTTGCCTATTTGTCACTTACAGAGA
AAACAAATAAAATGGTTCGGTGGAAGATTAGGTTTGAAGCTAGGATAGTT
TGCTCATGCCTGTAATCACAGTACTCAGGAAACCCAGGCCCTAAGAAGCC
CATATGTTGGAGGCTTATACCTGACTGTGTAATAAGTGTTAGCCTCAAGA
AAACAAAAATAATGAAGCAGGTTCAGAGTTTTATCATAAACTATGCATCT
AGAATCATTTTAGATGACATTTTTATTTAGCATGCTCCCGCTAGAAACTC
CAGAACATCCCGCATTCAGATTGTACTGACTGAGAAACAGACAATAATCA
AGGCAGGCAGAAAAGGCCAGGCCTTTTGAGACACTTGTGAGGTAATTAGA
CTGCCTTTACTCTGCAGACACCACCCACTCCTTTTCCAAGACGCTCGTGC
ATTGTGATTGCACCCAGACGGTGAACAGATTTGCTTCATATTGTGGTGGG
AAGAATGTGAAGAGGGAGCTACTGAGTAGGAGGGAGGCTACAGGTGAACA
CTTCCTTCCTGAGACAGGAAAGAAAGAAGGTGGGTGAGGGCTTTCTTCCT
TTTCTTCTTCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_l16.g1 MSMg01no330_l16.g1 CHROMAT_FILE:
MSMg01no330_l16.g1 PHD_FILE: MSMg01no330_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:30 2005
         (166 letters)



>mm_chr6_78230399_78230964
          Length = 566

 Score =  298 bits (154), Expect = 1e-85
 Identities = 163/166 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataatcaaggcaggcagaaaaggccaggccttttgagacacttgtgaggtaattagact 60
           |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 aataatcaaggcagacagaaaaggccaggctttttgagacacttgtgaggtaattagact 260

                                                                       
Query: 61  gcctttactctgcagacaccacccactccttttccaagacgctcgtgcattgtgattgca 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctttactctgcagacagcacccactccttttccaagacgctcgtgcattgtgattgca 320

                                                         
Query: 121 cccagacggtgaacagatttgcttcatattgtggtgggaagaatgt 166
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagacggtgaacagatttgcttcatattgtggtgggaagaatgt 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)