BAC Information

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BAC

Clone NameMSMg01-330O13
Chromosome6 (Build37)
Map Location 143,019,804 - 143,020,090
singlet/doubletsinglet
Overlap gene5730419I09Rik
Upstream geneSlco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056
Downstream geneEtnk1, D6Ertd474e, Sox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330O13.T7 (MSMg01no330_o13.b1)MSMg01-330O13.TJ (MSMg01no330_o13.g1)
ACCAG447341AG447342
length769816
length of high quality
(start - end)
290 (127 - 416)289 (124 - 412)
definitionCHROMAT_FILE: MSMg01no330_o13.b1 PHD_FILE: MSMg01no330_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:43 2005CHROMAT_FILE: MSMg01no330_o13.g1 PHD_FILE: MSMg01no330_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAGATCCGCGGAAT
TCAATTTATTTATCCAAAAAAATTTTTTAAAGATTTATTTATTTATTATA
TGTAAGTACACTGTAGTTGTCCCCCGACACCCCAGAAAAGGGCATCAGAT
CTCATTATGTATGTATGGTTGTGAGTCACCATGTGGTTGCTGGGATTTGA
ACTCAGGACCTTCAGAAGAGCAGTCAGTGTTCTTAACCGCTGAGCCATCT
CTCCAGCCCTTAAATAAAATTTTAAAGAACGATTGAAAATGTAAAGATTT
ACTATTTTTAGTACTTTAAGTACTAGAAATAGTTTTCCTATCAGATTGAC
TAAACTGTTTTTATTTGTATTATTTTGAATTTGTCATCTTTAATAACCTT
TAATGTTTTAGTGCCACACCTTATAATATGGATCCAGATTTTTTGAATAC
AATCAAAACAAAATCTTATTATAAACTTAATTTTTTTCCTTTTTTAAAAA
TAAAATTGATCTCAGAATAAACACTATAAACACCCATTCCTGTGTTTTTA
TTACCATCCCTGTTATCCCTCTCTAACATCTTTGATTTTTGACCGCTTAC
TTTATTTTTTTTAAGTATGCTCATCCTTTAACCTAATAAGCCAAGTGTAG
ATACATGAACCCCTTGGCTATATTTATTGTAACTTGTTCACCTGTGCCGG
CATTACTTTTCTTGTTTCCCTTCTGAGTCTATTATGACCACGACTTGTTT
ATCCTGTTTTATAATTTAA
TTTTTGTTGGTTTTTTTTTTTTTATCATACNAAACTTTTTCTTCCCAACT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCTACCCCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATC
AGTCTGGCGGTTCCTCAGAAAACTGTATATAGTACTACCGGAGGATCCAG
CAATACCTCTCTTGGGTTANTTTCCCAGCCGAACCAACTGGTAAGAAGGA
CACATGCTCCACTATGCCCATAGAAAAAAAAAAAAAAATAGCCTGAAGGT
GGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGG
TACATCTACACAATGGAGTACTACTCTGCTATTAAAAAGAATGAATTTAT
GAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAATGGAATTCACACAATTATGTACTTCCCTGATAATTG
AATATTAACCCTAAAACCTAATATACCCTAGAATATAAAATTAATATTTC
TCTATACACATGTAAAATCAATGAAAAATTGGATAAACTGAATTGTTGAT
AAACTTATGTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_o13.b1 MSMg01no330_o13.b1 CHROMAT_FILE:
MSMg01no330_o13.b1 PHD_FILE: MSMg01no330_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:43 2005
         (290 letters)



>mm_chr6_143019471_143020160
          Length = 690

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaccccagaaaagggcatcagatctcattatgtatgtatggttgtgagtcaccatgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acaccccagaaaagggcatcagatctcattatgtatgtatggttgtgagtcaccatgtgg 561

                                                                       
Query: 61  ttgctgggatttgaactcaggaccttcagaagagcagtcagtgttcttaaccgctgagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgctgggatttgaactcaggaccttcagaagagcagtcagtgttcttaaccgctgagcc 501

                                                                       
Query: 121 atctctccagcccttaaataaaattttaaagaacgattgaaaatgtaaagatttactatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atctctccagcccttaaataaaattttaaagaacgattgaaaatgtaaagatttactatt 441

                                                                       
Query: 181 tttagtactttaagtactagaaatagttttcctatcagattgactaaactgtttttattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttagtactttaagtactagaaatagttttcctatcagattgactaaactgtttttattt 381

                                                          
Query: 241 gtattattttgaatttgtcatctttaataacctttaatgttttagtg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtattattttgaatttgtcatctttaataacctttaatgttttagtg 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)