BAC Information

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BAC

Clone NameMSMg01-331C07
Chromosome6 (Build37)
Map Location 42,996,596 - 42,996,929
singlet/doubletsinglet
Overlap genenone
Upstream geneTas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444
Downstream geneEG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331C07.T7 (MSMg01no331_c07.b1)MSMg01-331C07.TJ (MSMg01no331_c07.g1)
ACCAG447517AG447518
length695725
length of high quality
(start - end)
78 (130 - 207)555 (62 - 616)
definitionCHROMAT_FILE: MSMg01no331_c07.b1 PHD_FILE: MSMg01no331_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:00 2005CHROMAT_FILE: MSMg01no331_c07.g1 PHD_FILE: MSMg01no331_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:00 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCTGTTTTTCCATGACCACGTTTTTGAAAGGTTATTTGGTTATCTGGAGT
CTTCTTCAGAAAAAGAAAATTTATGTGGAGTTCCTTGATCCACTTAGATT
TGACCTTATTACAAGGACATAGGAATGGATCAATTTGCATTCTTCTCCAT
GATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGCCTTTTTT
CCATTACATGTCTTCAGCTCCCTTGTCAAATATCAAGTGAGTATAGGTGT
GTGGCTTCATTTCTGGTTCTTCAATTCTATTCCATTGATCTACTTGTCCG
TCATCATACCTTTACCATGCATTTTTTATCCCAATTGCTCTGCACTACAG
CTTTATTTCACCCCCGTTGATTTCACCAGAGGTTCTTTTATAGTTTACAA
CAGCTTTTGCTATCCTACGCTTTTTGTCACCCCATACGAATTCCAATATC
GCCCTTTCTAATTTTTTTAATCAATTTACTTCCAATTTTGATTGTTATTG
CATTTAATCTGTACATTGCTCCCTGTACTCTATTCCCTTTTACTATCCTT
TCTCCTTGTCTTCCCCTTACTATGATACCATCTTTTTATCTTCTTTCAAC
TTTTTCTATCTCTTTCCTCTCCTTTCCGACATTTCCTACCTACCCACATT
CCTCCACTATCCCTTACTAACCATCTCTATCCCACCTTTTTTTTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCCGAATTCTCTCCTGAGGAATACCGAATGGCTGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCATCTCACACTAGTCAGAATGGCTAAAAATCA
AAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACA
CTCCTCCACTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGTGGTTCCTTTAAATAAAAATATTTTTAGGCTGGTTGTGATGGA
GCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGCATTTCTGA
GTTCAAGGTCAGCTTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTA
CACAGATAAACTCTGTCTTGAAAATAAATAAATAAACCAATAAATTTTTA
TACTTATATACTTTTAAACATTTTCTTCCCTTATTTACTGGCGGTATAAA
CCATGTTTCTCTAAACGAAAAGCGTTGATACATTATAGTAACTATGTAAC
ATAATATAATATAATAACAATGCATATTTCAATGTCTGCAATGGATAGGT
CAAACATGAAATATCTGTTCAGTACCTGATAGTAGATGCTTGTGCAGTCC
CAATCTACTGCTGTAATCCCAGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_c07.g1 MSMg01no331_c07.g1 CHROMAT_FILE:
MSMg01no331_c07.g1 PHD_FILE: MSMg01no331_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:00 2005
         (555 letters)



>mm_chr6_42995975_42996929
          Length = 955

 Score =  630 bits (326), Expect = 0.0
 Identities = 332/334 (99%)
 Strand = Plus / Minus

                                                                       
Query: 222 acaaccactctggaaatcagtctggtggttcctttaaataaaaatatttttaggctggtt 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 acaaccactctggaaatcagtctggtggttcctttaaataaaaatatttttaggctggtt 896

                                                                       
Query: 282 gtgatggagcatgcctttaatcccagcacttgggaggcagaggcaggtgcatttctgagt 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 gtgatggagcatgcctttaatcccagcacttgggaggcagaggcaggtgcatttctgagt 836

                                                                       
Query: 342 tcaaggtcagcttggtctacagagtgagttccaggacagccagggctacacagataaact 401
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 835 tcaaggtcagcttggtctacagagtgagttccaggacagccagggctacacagagaaact 776

                                                                       
Query: 402 ctgtcttgaaaataaataaataaaccaataaatttttatacttatatacttttaaacatt 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ctgtcttgaaaataaataaataaaccaataaatttttatacttatatacttttaaacatt 716

                                                                       
Query: 462 ttcttcccttatttactggcggtataaaccatgtttctctaaacgaaaagcgttgataca 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ttcttcccttatttactggcggtataaaccatgtttctctaaacgaaaagcgttgataca 656

                                             
Query: 522 ttatagtaactatgtaacataatataatataata 555
            |||||||||||||||||||||||||||||||||
Sbjct: 655 atatagtaactatgtaacataatataatataata 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)