XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAAAATGCGCGGAATTCA
TGTTTGTTCTCCTAAACTAAATATCACCTCTTCCAAAAACAAACAAAAAC
CAAAACCCAAAACAAACAAGCAAACAAAAACTCCTAACACCTCACCTTGA
AAGGAAGTGAAGCTTCTTATCCTGTTTCTCATTGTGATTTTGCAGAGTAT
CTGTTCTTCATTAGGCCCAGAGCCTCTGGATAGTAAATGCTCTGTTCTTT
TAAATCTTAATATCTCCAGTATAACCCTATAACACATTAAAAGCATATGT
TCTTAGTAAGAACGTCTTTCCTTACTGTGATTTTTTTAGCTATGATTTCA
ATAAACTAAACTAGTTATATAAAAGTAATTGCCGGGCATGGTGGCGCATG
CCTTTAATCCCAACACTCACGAGGCAGACAGAGGCAGGCGGATTTCTGAG
TTCCAGGCCAGCCTGGTCTACAAAGTGAGTTCTAGGACAGCCAGGGCTAC
ACAGAAAAAAAAAAAAAAAAAAAGTAATTGTCATTCATTGGCTCTTAAGT
TTTGGAGGAGTTAAGTAGTTGGACAAGGTTGCCAACTAGCCCAACTTGCA
TTTAAACCAAAGATTGTCAGAATCTAAAGCATATATTTAAAATAAAATAA
AATAAAATAAAATAAAATAAAATAAAATGATCAGTCTGCTTTGAAGTAGC
TATGTTTTGCTTTGTTTTCTGTTTTCTTGGCTAAAGCTTAGAGTCAN

ATGGGGAGGCCGGAGGNNGCGGTTTTCCCACCNGNNNAANANAGAAGGAT
TTCCCCACCCGNNNANNAGGGNNANGNGGAGAAACCGGNCNNNAAAAAAT
TTAACCCCAAAAAAGGNGGNGGANGNNGCNGNGANGGGGGAGGNGNACGC
AAAGCAACCCAGAACGGGGGAAACCGAGGCCGGCAGACCCCGGACGGCAC
AGNCNACCAGGACCACAGAGAGAGCCCCAGGACATTTTTTTTTTACATTG
AGAGATCCTGACCTACAAATAAGACAAGAACGCAGACAGGGGAGGGACGC
CCTATTGAGTCGTTCTACACCACCCAGACCAGCGCCAAACACCGGGGAAA
GGGCCCCCCCCCCCCCAAAAGAAGAGAGGAGAAAGGACAAAAGACAAACA
AACCCCCACAAACACCAAAACAAAGAGCCCCNAAACAGCAAAACACCCGG
CCCCCCCGACACCCAGAGCCAAGACAGAAAACACACCCCCCCGCCCGGAA
AGAAACCCACAACCAAACACCCCCCCAGCCAAGACACCCCAAGACAAACC
GCCCCGCCCCCCCCGACCCAGCCCCCCCCCCCCCGGAGAAACCCACCCCC
GAACCCCAAACCACAGGAACACCCCCCCCCGCCAGAGCCACCCGGCCCGG
ATTTTTTTTTTTTTTTTCGCGCGCGCCCCCCGCCATTTACCCGCCCTCTT
TTTCTCCTGCACACTTTTTATTATCTCTTCCCTCGCCTTATTTCTCCCCT
TTCTTCCC

Query= MSMg01no331_d19.b1 MSMg01no331_d19.b1 CHROMAT_FILE:
MSMg01no331_d19.b1 PHD_FILE: MSMg01no331_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:06 2005
         (608 letters)



>mm_chr6_35487078_35488083
          Length = 1006

 Score =  986 bits (510), Expect = 0.0
 Identities = 561/596 (94%), Gaps = 30/596 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaatatcacctcttccaaaaacaaacaaaaaccaaaacccaaaacaaacaagcaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 taaatatcacctcttccaaaaacaaacaaaaaccaaaacccaaaacaaacaagcaaacaa 520

                                                                       
Query: 61  aaactcctaacacctcaccttgaaaggaagtgaagcttcttatcctgtttctcattgtga 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aaactcccaacacctcaccttgaaaggaagtgaagcttcttatcctgtttctcattgtga 460

                                                                       
Query: 121 ttttgcagagtatctgttcttcattaggcccagagcctctggatagtaaatgctctgttc 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 459 ttttgcagagtatctgttcttcattaggcccagagcctctggacagtaaatgctctgttc 400

                                                                       
Query: 181 ttttaaatcttaatatctccagtataaccctataacacattaaaagcatatgttcttagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttttaaatcttaatatctccagtataaccctataacacattaaaagcatatgttcttagt 340

                                                                       
Query: 241 aagaacgtctttccttactgtgatttttttagctatgatttcaataaactaaactagtta 300
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 339 aagaacgtctttccttactgtga--tttttagctatgatttcaataaactaaactagtta 282

                                                                       
Query: 301 tataaaagtaattgccgggcatggtggcgcatgcctttaatcccaacactcacgaggcag 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 281 tataaaagtaattgccgggcatggtggcgcatgcctttaatcccaacactcaggaggcag 222

                                                                       
Query: 361 acagaggcaggcggatttctgagttccaggccagcctggtctacaaagtgagttctagga 420
           |||||||                        |||||||||||||||||||||||||||||
Sbjct: 221 acagagg------------------------cagcctggtctacaaagtgagttctagga 186

                                                                       
Query: 421 cagccagggctacacagaaaaaaaaaaaaaaaaaaagtaattgtcattcattggctctta 480
           |||||||||||||||||    |||||||||||||||||||||| ||||||||||||||||
Sbjct: 185 cagccagggctacacag----aaaaaaaaaaaaaaagtaattgccattcattggctctta 130

                                                                       
Query: 481 agttttggaggagttaagtagttggacaaggttgccaactagcccaacttgcatttaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 129 agttttggaggagttaagtagttggacaaggttgccaactagcccaacttggatttaaac 70

                                                                   
Query: 541 caaagattgtcagaatctaaagcatatatttaaaataaaataaaataaaataaaat 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  caaagattgtcagaatctaaagcatatatttaaaataaaataaaataaaataaaat 14


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1006
Length adjustment: 10
Effective length of query: 598
Effective length of database: 996
Effective search space:   595608
Effective search space used:   595608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)