Query= MSMg01no331_g18.b1 MSMg01no331_g18.b1 CHROMAT_FILE:
MSMg01no331_g18.b1 PHD_FILE: MSMg01no331_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:19 2005
(696 letters)
>mm_chr6_22107982_22109077
Length = 1096
Score = 1278 bits (661), Expect = 0.0
Identities = 688/697 (98%), Gaps = 2/697 (0%)
Strand = Plus / Minus
Query: 1 tcatgtggattcacaatttggatgagtctgctggggtgtttcagtaaaaataaaaggcag 60
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 896 tcatgtggattcagaatttggatgagtctgctggggtatttcagtaaaaataaaaggcag 837
Query: 61 ggatgctaaagaaataaagtttaaagaaagcattttaaggcttatacatctatgtcctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ggatgctaaagaaataaagtttaaagaaagcattttaaggcttatacatctatgtcctct 777
Query: 121 caagttccttcttggcatgatgtgaatctatgcctttctatttttttaaaatagaaaaac 180
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 776 caagttccttcttggcgtgatgtgaatctatgcctttcta-ttttttaaaatagaaaaac 718
Query: 181 aaacagactgagacacagagaactttcattcctctttgatttcctctttgatttctccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aaacagactgagacacagagaactttcattcctctttgatttcctctttgatttctccca 658
Query: 241 aattgggatttcattgaaaatgaatgactgtccttccatttgcaaattccccttccccaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aattgggatttcattgaaaatgaatgactgtccttccatttgcaaattccccttccccaa 598
Query: 301 aattcttggaaaatccgaattttctaaatcacaaggataaactgaacacatgcctttttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aattcttggaaaatccgaattttctaaatcacaaggataaactgaacacatgcctttttc 538
Query: 361 tcttttcaaatgtgaaatttagaatttatgccacttttattatacccaataacgagcaaa 420
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 537 tcttttcaaatgtgaaatttagaatttatgccacttttattattcccaataaaaagcaaa 478
Query: 421 atctgtattctgtgggtcagaaaagcaacttttgaagtcagatgtatttatcaacatatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 atctgtattctgtgggtcagaaaagcaacttttgaagtcagatgtatttatcaacatatt 418
Query: 481 cattagaggcagttttcccctccagtttggagaacgtttgaaaaccaataccagtacgat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cattagaggcagttttcccctccagtttggagaacgtttgaaaaccaataccagtacgat 358
Query: 541 ttagatagtcataattgtttacacatgtctcagtaacaaaatatatttggaggg-tggca 599
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 357 ttagatagtcataattgtttacacatgtctcagtaacaaaatatatttgggggggtggca 298
Query: 600 ctttacttttaggatttgagacagctggaaattattatcattatggtttaaaatgttcca 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ctttacttttaggatttgagacagctggaaattattatcattatggtttaaaatgttcca 238
Query: 660 actggataatggtgttaaaaagaatataacattctag 696
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 actggataatggtgttaaaaagaatataacattctag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space: 744996
Effective search space used: 744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_g18.g1 MSMg01no331_g18.g1 CHROMAT_FILE:
MSMg01no331_g18.g1 PHD_FILE: MSMg01no331_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:19 2005
(670 letters)
>mm_chr6_22026247_22027320
Length = 1074
Score = 1185 bits (613), Expect = 0.0
Identities = 658/675 (97%), Gaps = 6/675 (0%)
Strand = Plus / Plus
Query: 1 tttctgctacatctaaattgagctgtagaatcactacatgttggccagaatctattgtga 60
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctgctacttctaaattgagctatagaatcactacatgttggccagaatctattgtga 260
Query: 61 tcaaaaataatgtcaatttttttt--catgactggtgagtgatatcagaatttactggac 118
|||||||||||||| ||||||||| ||||||||||||||||||| || | |||||||||
Sbjct: 261 tcaaaaataatgtcgattttttttttcatgactggtgagtgatattaggacttactggac 320
Query: 119 tttttaaatcaatgactatataaccctaatttattgaagatgtcaggaacaattttgagt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttaaatcaatgactatataaccctaatttattgaagatgtcaggaacaattttgagt 380
Query: 179 gccacaaatattttcctcaagatatttaaaaataaatagcaaaatacatttttttttttt 238
||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 381 gccacaaatattttcttcaagatattttaaaa-aaatagcaaaatacatttttttttttt 439
Query: 239 t---actatcagctttttctcagtcatcaaagtagcagattaaaacaaggtaatttcaag 295
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttttactatcagctttttctcagtcatcaaagtagcagattaaaacaaggtaatttcaag 499
Query: 296 tttgggattgccttacagggatgttctagtttgctttattttctgttgttgccaaaaata 355
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 500 tttgggattgccttacagggatgttctagtttgctttattttctgttgttgtcaaaaata 559
Query: 356 tcatgacagaaagcagcttaaggaagaaatggggttcatactgcttacacttctaggtca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcatgacagaaagcagcttaaggaagaaatggggttcatactgcttacacttctaggtca 619
Query: 416 gtctgtcactgagcaactcaagcagaaacctggaggtaggaaatgaagcagagaccatgg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtctgtcactgagcaactcaagcagaaacctggaggtaggaaatgaagcagagaccatgg 679
Query: 476 aagagtgctgctattggcttgttccttgatagtgctcatctatctttctttaaaaaaaaa 535
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 680 aagagtgctgctattggcttgttccttgatagtgctcatctatctttcttttaaaaaaaa 739
Query: 536 ttctagactcatctgcctaggaatggtacagtccatcaattagtaatgaagataatgccc 595
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcctagactcatctgcctaggaatggtacagtccatcaattagtaatgaagataatgccc 799
Query: 596 ttccgacatgctcacagacagtctgatgaagccaattcttcagttgaagtttcctcttcc 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttccgacatgctcacagacagtctgatgaagccaattcttcagttgaagtttcctcttcc 859
Query: 656 cagttgaatctaggt 670
|||||||||||||||
Sbjct: 860 cagttgaatctaggt 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1074
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1064
Effective search space: 702240
Effective search space used: 702240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
