BAC Information

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BAC

Clone NameMSMg01-331K01
Chromosome6 (Build37)
Map Location 125,158,102 - 125,158,434
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51
Downstream geneVamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3, LOC100043565
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331K01.T7 (MSMg01no331_k01.b1)MSMg01-331K01.TJ (MSMg01no331_k01.g1)
ACCAG447875AG447876
length875752
length of high quality
(start - end)
---379 (74 - 452)
definitionCHROMAT_FILE: MSMg01no331_k01.b1 PHD_FILE: MSMg01no331_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:33 2005CHROMAT_FILE: MSMg01no331_k01.g1 PHD_FILE: MSMg01no331_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCCTCCTCTCTTTCTCTNAACTCTTCCCTTTTTCCTCGACACGCGTT
TTCTTAATTTGCGGCCGCTAAACGAATACTATATTCCGCAGGGGGNGTNA
ATCATTGNAGTTTCCGAAAACATTAATGGACTAATAAAATCTTCATCAGA
GGCTCTCATACTGTGAGTCACTTCTCCTTTGTAGGTCAAACAACCCTTTC
TCAGGGGTCATTGATACTATTGGAAAACACCTATACTTACATTATGATTC
ATTACGGTAGTAAAGCTATAGGTTATGAAAGCTGTAAGAAACATTTCTGT
GGCTGCTTTCCCGTCTCACTATAACATGATCGTAGTGCATAATATGTTTC
ATCATTCGCCAATGTCGATCTGAACTTTTATTCAGCTTATAATATCTCTT
CTGACACCACTTTGCATACCCTATTTCCTTGCATTTCCCTTACCCAATAA
TTTATTGTCCCATTTTCTGACTTCTGCTTCCCCGTGTATGTTCACCTCAT
TGTTTAAACGATTTTTATCCACCCCGCTTTCCGATTGCTATACAATTTAT
TTCACATTTTCCTTTTTTCCTTATGCCCTTTTTTTCCCCCTATTATAGAC
TTCAACCGCCCGCTTTTGCCCTCTATTTACCCCCCTTTTCCCCCATCTTC
CCCACGCCACCAACCTTCTTTCTTTTTCTTTTTACTTTTATCTGTTCTGT
TTTTCTTTCCACCTTTTCTCTCCCTCCGCACTCCCTTTTACTTTGCTTTT
CCCCCTTTATACATTCATTCCATTACTTTTTCCTTTTGCGTCCCATTTTC
CCCCCCCTATCCTCTATTCCCATAGACTTCCTCTACCATAAACTTCCCAA
TATCCACACTCACCATTATTTTATT
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGAAACCAGAACTTAGGGAAGCTCAGAGAG
AGCAAGATAACATGTAAGCAAAAGGCTGAAGCCTGGATGGCCTCTCCTCC
CCAAGGTAAAGAGAGTATTAATTAGGTAGATCAGAGTCTTAAATAAAGAT
CCATTTATGGGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCTCTGGCTGC
TCTTCCAGAGGTCCTGAGTTCAAATCTCAGCACCCACACTACAACTCACA
ACTGTCTGCCCCTCCAATTCTAGGGGATCTGGCACCTTCAAACATACAGG
GGGGTAAAATACCAATGCACATAGAATAAAAATAAATACATCTTTTTTAA
AAAGATCCATTTGAGCCAGGTGTGGTGGTGCACACCTTTAATCCCAGCAC
TCAGGAGGCAGGGGCTTCTGTCCTTCTGAATTAGATGCCAGCTTGTACTA
TACACTGCCTACCCTTACCGTTTCCCTTTGATAGAGACGTCTGGTTTCGA
AAGCCTATTTACTTAAACAACTTTTTTTTTGCATTTGTACAGCCTATTTA
GCTTCTGGTGGATTCTTATATTTACATCCCGGCTCAATTCTTTTTTCTCT
TCGTTCGATTGCCTTTTTCAGCTTGACAGGATGTCCTTGCTTGTCTTCAG
TTTTTTATTAGAAGACCGCTGCACCTGTGCCTTTATTTTCACCATTCTGA
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_k01.g1 MSMg01no331_k01.g1 CHROMAT_FILE:
MSMg01no331_k01.g1 PHD_FILE: MSMg01no331_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:33 2005
         (379 letters)



>mm_chr6_125158102_125158880
          Length = 779

 Score =  605 bits (313), Expect = e-177
 Identities = 328/333 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccagaacttagggaagctcagagagagcaagataacatgtaagcaaaaggctgaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaccagaacttagggaagctcagagagagcaagataacatgtaagcaaaaggctgaagcc 274

                                                                       
Query: 61  tggatggcctctcctccccaaggtaaagagagtattaattaggtagatcagagtcttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tggatggcctctcctccccaaggtaaagagagtattaattaggtagatcagagtcttaaa 214

                                                                       
Query: 121 taaagatccatttatgggggctggagagatggctcagcagttaagagctctggctgctct 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 taaagatccatttgtgggggctggagagatggctcagcagttaagagctctggctgctct 154

                                                                       
Query: 181 tccagaggtcctgagttcaaatctcagcacccacactacaactcacaactgtctgcccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tccagaggtcctgagttcaaatctcagcacccacactacaactcacaactgtctgcccct 94

                                                                       
Query: 241 ccaattctaggggatctggcaccttcaaacatacaggggggtaaaataccaatgcacata 300
           ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 93  ccaattctaggggatctggcaccttcaaacatacacgggggcaaaataccaatgcacata 34

                                            
Query: 301 gaataaaaataaatacatcttttttaaaaagat 333
           ||||||||||||||| |||| ||||||||||||
Sbjct: 33  gaataaaaataaataaatctcttttaaaaagat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)