BAC Information

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BAC

Clone NameMSMg01-331P03
Chromosome6 (Build37)
Map Location 10,709,670 - 10,710,327
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264
Downstream geneLOC100040285, LOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331P03.T7 (MSMg01no331_p03.b1)MSMg01-331P03.TJ (MSMg01no331_p03.g1)
ACCAG448110AG448111
length725729
length of high quality
(start - end)
656 (70 - 725)658 (72 - 729)
definitionCHROMAT_FILE: MSMg01no331_p03.b1 PHD_FILE: MSMg01no331_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:56 2005CHROMAT_FILE: MSMg01no331_p03.g1 PHD_FILE: MSMg01no331_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAGACCGCG
GAATTCAAGGCCCTTACCTAAACATGATAAAAGCAATCTACAGCAAACCA
GTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAACAATCCCACTAAA
ATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAG
TACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGG
ATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATAT
GATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACC
TGATAAACAGTTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAAAAAG
TCAATGGCTTTTCTCTACACAAAGAATAAACAGGCTGAAAAAGAAATTAG
GGAAACAACACCCTTCTCAATAGTCAAAAATAATATAAAATATCTCGGCG
TGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCT
CTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATG
TTCATGGATTGGCAGGATCAACATTGTATAAATGGCTATCTTGCCAAAAG
CAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTC
AACGAATTACAAGGAGCAATATGCA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATTACCAGTAGCTACTCTGCCATGCAAA
GTGCACTACATGGAAATGTTACAGGCTATCAAGCAGAAACGGCAGATTTG
TGTGCATTTTAAACTCAATTTCCATTATTCCAGTTTCTTCTCCTCTCCAT
CTCTCCTTCCATACCATCTTCACTCTTTTTTTCACAAAATCTAAAAGTTA
ATATGGACAGAAAACTAAAAAAAAAAAAAAATTCAAATCAAGTGCTACAA
AGATATGGAAGACATTTCTGTTCCCACTAGAGTTTAGGGCTTATCTTCCA
ATCATATAACCCAGTGTAACGAAAGGAATGTCGTGCTATGCAAGACATTG
TGTGATGAATGCTGCCCAACAGGGGATAAACCCAAGAAGATTATAGTTCA
CTCAGTTCTATTAGGTTTTCAATACTGATCCACAAATATGTATACCTGTG
TAGACAATATAAGGAACATGGGGAACCATAAAAAACTGAATTCTACAGAG
ATCATCTCTGTGATAACACTAGTATTGGAAACAGGTATTTAATAGTGATT
GCTATATGACTCAACTATTTTAGCATGACTCCAGTTTCATGAGTTATTAC
CGTTAATTTTGTGATCAAGAAACACTAAAGGAAGGCAAAGTATTTCATTT
GATTTAACTGAATGAGGTACAGACAGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_p03.g1 MSMg01no331_p03.g1 CHROMAT_FILE:
MSMg01no331_p03.g1 PHD_FILE: MSMg01no331_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:56 2005
         (658 letters)



>mm_chr6_10709470_10710527
          Length = 1058

 Score = 1241 bits (642), Expect = 0.0
 Identities = 654/658 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattaccagtagctactctgccatgcaaagtgcactacatggaaatgttacaggctatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tattaccagtagctactctgccatgcaaagtgcactacatggaaatgttacaggctatca 799

                                                                       
Query: 61  agcagaaacggcagatttgtgtgcattttaaactcaatttccattattccagtttcttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 agcagaaacggcagatttgtgtgcattttaaactcaatttccattattccagtttcttct 739

                                                                       
Query: 121 cctctccatctctccttccataccatcttcactctttttttcacaaaatctaaaagttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cctctccatctctccttccataccatcttcactctttttttcacaaaatctaaaagttaa 679

                                                                       
Query: 181 tatggacagaaaactaaaaaaaaaaaaaaattcaaatcaagtgctacaaagatatggaag 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 678 tatggacagaaatctaaaaaaaaaaaaaaattcaaatcaagtgctacaaagctatggaag 619

                                                                       
Query: 241 acatttctgttcccactagagtttagggcttatcttccaatcatataacccagtgtaacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acatttctgttcccactagagtttagggcttatcttccaatcatataacccagtgtaacg 559

                                                                       
Query: 301 aaaggaatgtcgtgctatgcaagacattgtgtgatgaatgctgcccaacaggggataaac 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 558 aaaggaatgtcgtgctatgcaagacattgtgtgatgaatgctgcccaagaggggataaac 499

                                                                       
Query: 361 ccaagaagattatagttcactcagttctattaggttttcaatactgatccacaaatatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccaagaagattatagttcactcagttctattaggttttcaatactgatccacaaatatgt 439

                                                                       
Query: 421 atacctgtgtagacaatataaggaacatggggaaccataaaaaactgaattctacagaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atacctgtgtagacaatataaggaacatggggaaccataaaaaactgaattctacagaga 379

                                                                       
Query: 481 tcatctctgtgataacactagtattggaaacaggtatttaatagtgattgctatatgact 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 378 tcatctctgtgataacactagtattggaaacgggtatttaatagtgattgctatatgact 319

                                                                       
Query: 541 caactattttagcatgactccagtttcatgagttattaccgttaattttgtgatcaagaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 caactattttagcatgactccagtttcatgagttattaccgttaattttgtgatcaagaa 259

                                                                     
Query: 601 acactaaaggaaggcaaagtatttcatttgatttaactgaatgaggtacagacagaca 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acactaaaggaaggcaaagtatttcatttgatttaactgaatgaggtacagacagaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)