BAC Information

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BAC

Clone NameMSMg01-331P18
Chromosome6 (Build37)
Map Location 17,145,059 - 17,145,293
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041116, Tcfec, EG435881, Tes, EG232599
Downstream geneCav2, Cav1, Met, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331P18.T7 (MSMg01no331_p18.b1)MSMg01-331P18.TJ (MSMg01no331_p18.g1)
ACCAG448140AG448141
length733780
length of high quality
(start - end)
384 (324 - 707)235 (76 - 310)
definitionCHROMAT_FILE: MSMg01no331_p18.b1 PHD_FILE: MSMg01no331_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:59 2005CHROMAT_FILE: MSMg01no331_p18.g1 PHD_FILE: MSMg01no331_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTACGCTGCGCG
GAATTCTTTGNTTAGCTATACAACCATTTTTTAATGGGGTTATTTGATTT
TCTGGAGTCCACCTTCTTGAGCTCTTTATATATATTGGATATTAGTCCCC
TATCCGATTTGGGATAGGTAAAGATCCTTTCCCAGTCTGTTGGTGGCCTT
TTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTAT
GAGGTCCCATTTATCGATTATTGATCTTACAGCACAAGCCATTGCTGTTC
TATTCAGGAATTTTTCTCTTGTACCCATATCTTAGAGGCTTTTCCCTACT
TTCTCCTCTTTAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAAT
CCACTTAGATTTGACCTCAGTACAAGGATATAGAAATGGATCAATTCGCG
TTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATG
CTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTC
ACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTGGT
CTACTTGTCTGTCACTATACCAGTACCATGCAGGTTTGATCACAATTGCT
CTGTAGTACATCTTTAGGTCGGGCATGGTGATTCCACTAGAGGTTCTTTT
ATCCTTGAGATGAGTTTTTGCTATCCTAGATTT
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGGTGGTACGTACCTAGATTTCG
AGCAGTGCTTTGACAGTGTTTGACAAGCTTATGCTCACTCTCTCACTCTA
TTTCCTTTATCCAGACAACAAGCCTGACGTTCACTGTTATTTCCTCTTAG
AATAAGAAGAAACTGAGTCACAGCTAAAGTGCTTCATTGATTAGGATTGT
ACATCTAACAAAGCCATTACTCAGGGCACCGGGATTCTGGTTTGGGGTAA
TCAGTCTGTCTTTCTGTTTCTATAATATGCAATCACGGAACCCACCTTTT
AAGTGTTATTGTAAAACTGACTTTAGCAATGACTTATGACTGATTCTATG
TATTTGTATTTTTCCCCCCCACCCGTTTATTTCCAACCTTGTTCAGTGCT
ACCCGTTTTCATATCCTATTTCCCTTACATCGTACTATTTATCCACCATT
GTCTCACTTCTTATTTATATACTTTTATTTTTTCTGATTCTCACCTATTT
CTCTCTTCCCTTTATGCCCCCCGACCCCCTTCTCCTCTCTTTTCTTTTTT
ATTTTCTACTCTCCTCTAATATTCATCTGTCTTTTTCCTCTCCCCTCCCT
TTTTTATTATCCTTTTTTATTTCTTCCCCTCTTTTCTCTTTCTTTTTTTT
TTTCCATTGATAACCTACTCCTTATTCTGTTTCTATTTTTACACCCTTTA
TTATTACTTTCTCTCGCTCCCACTATCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_p18.g1 MSMg01no331_p18.g1 CHROMAT_FILE:
MSMg01no331_p18.g1 PHD_FILE: MSMg01no331_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:59 2005
         (235 letters)



>mm_chr6_17144859_17145493
          Length = 635

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggtggtacgtacctagatttcgagcagtgctttgacagtgtttgacaagcttatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcaggtggtacgtacctagatttcgagcagtgctttgacagtgtttgacaagcttatgct 376

                                                                       
Query: 61  cactctctcactctatttcctttatccagacaacaagcctgacgttcactgttatttcct 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 375 cactctctcactctatttcctttatccagacaacaagcctgacattcactgttatttcct 316

                                                                       
Query: 121 cttagaataagaagaaactgagtcacagctaaagtgcttcattgattaggattgtacatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cttagaataagaagaaactgagtcacagctaaagtgcttcattgattaggattgtacatc 256

                                                                  
Query: 181 taacaaagccattactcagggcaccgggattctggtttggggtaatcagtctgtc 235
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 255 taacaaagccattactcagggcaccgggattctggtttggggtaaacagtctgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)