BAC Information

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BAC

Clone NameMSMg01-332B21
Chromosome6 (Build37)
Map Location 81,504,309 - 81,505,088
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043390, LOC100042991
Downstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332B21.T7 (MSMg01no332_b21.b1)MSMg01-332B21.TJ (MSMg01no332_b21.g1)
ACCAG448234AG448235
length1,2851,245
length of high quality
(start - end)		640 (146 - 785)781 (139 - 919)
definitionCHROMAT_FILE: MSMg01no332_b21.b1 PHD_FILE: MSMg01no332_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:14 2005CHROMAT_FILE: MSMg01no332_b21.g1 PHD_FILE: MSMg01no332_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCGACCAACCATGNAAAAACATTGGCGCTAAGACTCCATAGGGAGAGG
ATCCGCGGAATTCAGACACCATACCTACTTACACCTGCTCCTTATATTTN
AANNTGGTAGNNAANATCCCCTTAAATGCCCCCAAANTTGAAGNAATCTC
ANTAAAATCAGGGACTAGACAAGACTGCCTACTCTCTCCCTACCTGTTCA
TATATAGTGCTCGAAGTCCTAGCCAGAGCAATTAAACAACAAAAGGAGAT
ACAAATTGGAAAGGAAGAAGTCAAATATCACTATTTGCAGATGTTTGATA
GTATACTTAAGTAACCCCAAAAATTCGACCAGAGAACTCCTAAACCTGAT
AAACAACTTCAGCAAAGTGGCTGGATATAAAATTAACTCAAACAAATCAG
TAGCCTTCCTCTACTCAAAGGATAAACAGGCTGAGAAAGAAATTAGAGAA
ACAACACCCTTCACAATAGTCACAAATAATATAAAATACCTTGGTGTGAC
TCTAACTAATCAAGTGAAAGATCTGTTTGACAAGAACTTTAAGTCTCTGA
AGAAAGCAATTTTAAAGAAGATCTCATAAGATGGAAAGATCTCCCATGCT
CATGGATTGGTAGAATTAATATAGTAAAAATTGCCATCTTCCTGAAAGCA
ATCTACAGATTCAAGGCAATCCCCATCAAAATTCCAACTCAATTCTTCAC
AGAGTTAGAAAGAGCAATTTGAAATTCATCTAGAATAACAAAAATCACAG
GATAGGGAAAACTTTTCTCAACAATAAAAGAACTCCTGAGGGGATCACCA
TCTCTGACCTCAAGCTGTACTATAGAGCAATTGTGATAAAAAATGGCATG
GTATTGTTACTGTGACAGGCACGTANATCTATATAATAGAACTGAAGACT
CCCAAATGAACCTCCTATCTATGGGCCCTTGATCTTTGGAACAAAAAATA
AAAACTCCACTGCGAAAAAAAAAAAGAATTTCCACAAATGGGGCTGGGTC
ACTTGGCGGTAGCCTTTTNAAAAATGGAAAAAAAACCCTTCCTATCTCCT
TGTACAAGGTTCAGCCCAAGGGAAAAGGGCCTCCCATAAACCCGATCTTT
GAATTAAAAAAAAAAAATGGGAAAAACCTTGAACTTGGGCCCGGGGGAAA
GCTTGACAAACACCAAATTTTGCTCAAACAAATAAAAAAAAGGTCCAAAG
AAAAAGTTTTTGGGGGGACTTCTTGAAAAACCCCCCATGGAAAATTTCCC
TCTTTGAGGTTTCTTTAAAATAAAAATCCTTATTA

NCCCGCTCCTNNNNNAACACATGGAGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATAAGCCCGNAAGAAG
GGGACATGAACACAGCAGCACCTTTAAAAGAACATTCGGTGACTTCCCCC
AACCCAATGGCTGCAGAAAAAATAGCCAGTGTCTGGATTAAAGTGTGTTT
TGAGGCTGCAGAAAAGTCAGGCATGTGAGGGAGACGAAAACCTGTAAGAT
AAGGGGGAAAGACTAAGATAAAAGAACTGAGAGGAGAGAACGACATACAT
GAGAAGCAGAGCCTATAAATAATAGGCATGCTACAGAGGGAACAGGAAAA
AAATAAACGAATTTAAATGAAAAGCATTGCGCAAACTTGCACATGAAGAT
TGAGAAAGGAAAATCTATTCTAGGCAGAGAGGATGGAAAGAAACCAGGCA
TGGGTATTTCATTACAAAGACATTTAGATTTTAAAAATAAAAGAAGGAAT
TTAAGGAAGAAAAGCCTGTTTCTTTCAAAGCATAAAATGTCTCAGTTTTG
TAGTACCAAAGCTGAAAGTCAGTAGGTACAACAATACTTAAGGCATTTCA
ATGGGCAAACCGCACTAGGAATTTAATAATTCACTATATATTCACAGAAG
TACACATACCAATAAGCTTACAGGGTAGAGGATAGCATGTGCGATGTGAG
AGGATAAACCCAGGGATGGGGAGATTAAGAGAAAAATAGAGATTCATTGC
CTGATGTCTTTGGAATAATATTGCATTGTGGACTGCAGACTTCAGGGCTT
GACTTGAGAACATAATATTAAAAAGAAGCTTTGAGCCAGGCCTAATGGTA
TATGCCTTTAATCCCAGCACTTAGGAGGCATAGGCAGGGGGAATTTCTGT
GAGTTTGAGGCCATCCTGNTCTACATAGTGAGTTCCAGGACAGCTAGAAT
ATGTCCAGGGGCCTGTTTCAGAAGAACCAACCCAACCAAAAATAAAACAA
AACCAAAATACCCCCCCCAGATTTTATAGGAAAACAGTATATTGGGGTTT
TGACCCGCCCTGTTTTAATTGTTTGTCCCCTTGTAAGCCCAAAATTATTC
TGCAAAGGCGATCCCACTAAAAAGATTGCCCCCGAAAAAATTTTCACGGG
GCCTGTCTTTAAAATTTTTCCTTAAAGAAAAAAATTAAAAAAGCCCCCTT
CCCCCGGGGGTGCCCCTTCTTTTGTAAAAAAACCTGGCGGGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_b21.g1 MSMg01no332_b21.g1 CHROMAT_FILE:
MSMg01no332_b21.g1 PHD_FILE: MSMg01no332_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:14 2005
         (781 letters)



>mm_chr6_81504225_81505405
          Length = 1181

 Score = 1462 bits (756), Expect = 0.0
 Identities = 774/780 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgacttcccccaacccaatggctgcagaaaaaatagccagtgtctggattaaagtgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gtgacttcccccaacccaatggctgcagaaaaaatagccagtgtctggattaaagtgtgt 805

                                                                       
Query: 61  tttgaggctgcagaaaagtcaggcatgtgagggagacgaaaacctgtaagataaggggga 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 804 tttgaggctgcagaaaagtcaggcatgtgagggagaagaaaacctgtaagataaggggga 745

                                                                       
Query: 121 aagactaagataaaagaactgagaggagagaacgacatacatgagaagcagagcctataa 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 744 aagactaagataaaagaactgagaggagagaatgacatacatgagaagcagagcctataa 685

                                                                       
Query: 181 ataataggcatgctacagagggaacaggaaaaaaataaacgaatttaaatgaaaagcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ataataggcatgctacagagggaacaggaaaaaaataaacgaatttaaatgaaaagcatt 625

                                                                       
Query: 241 gcgcaaacttgcacatgaagattgagaaaggaaaatctattctaggcagagaggatggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcgcaaacttgcacatgaagattgagaaaggaaaatctattctaggcagagaggatggaa 565

                                                                       
Query: 301 agaaaccaggcatgggtatttcattacaaagacatttagattttaaaaataaaagaagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agaaaccaggcatgggtatttcattacaaagacatttagattttaaaaataaaagaagga 505

                                                                       
Query: 361 atttaaggaagaaaagcctgtttctttcaaagcataaaatgtctcagttttgtagtacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atttaaggaagaaaagcctgtttctttcaaagcataaaatgtctcagttttgtagtacca 445

                                                                       
Query: 421 aagctgaaagtcagtaggtacaacaatacttaaggcatttcaatgggcaaaccgcactag 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 444 aagctgaaagtcagtaggtacaacaatacttaaggcattccaatgggcaaaccgcactag 385

                                                                       
Query: 481 gaatttaataattcactatatattcacagaagtacacataccaataagcttacagggtag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaatttaataattcactatatattcacagaagtacacataccaataagcttacagggtag 325

                                                                       
Query: 541 aggatagcatgtgcgatgtgagaggataaacccagggatggggagattaagagaaaaata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggatagcatgtgcgatgtgagaggataaacccagggatggggagattaagagaaaaata 265

                                                                       
Query: 601 gagattcattgcctgatgtctttggaataatattgcattgtggactgcagacttcagggc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagattcattgcctgatgtctttggaataatattgcattgtggactgcagacttcagggc 205

                                                                       
Query: 661 ttgacttgagaacataatattaaaaagaagctttgagccaggcctaatggtatatgcctt 720
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 204 ttgacttgagaacataatattaaaaagaagctttgagccaggcataatggtatatgcctt 145

                                                                       
Query: 721 taatcccagcacttaggaggcataggcagggggaatttctgtgagtttgaggccatcctg 780
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 144 taatcccaacacttaggaggcagaggcagggggaatttctgtgagtttgaggccatcctg 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 781
Length of database: 1181
Length adjustment: 10
Effective length of query: 771
Effective length of database: 1171
Effective search space:   902841
Effective search space used:   902841
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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