BAC Information

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BAC

Clone NameMSMg01-332E20
Chromosome6 (Build37)
Map Location 94,302,577 - 94,303,077
singlet/doubletsinglet
Overlap geneLOC100043262
Upstream geneLOC665831, Magi1
Downstream geneLOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332E20.T7 (MSMg01no332_e20.b1)MSMg01-332E20.TJ (MSMg01no332_e20.g1)
ACCAG448371AG448372
length1,3151,317
length of high quality
(start - end)
500 (151 - 650)---
definitionCHROMAT_FILE: MSMg01no332_e20.b1 PHD_FILE: MSMg01no332_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:36 2005CHROMAT_FILE: MSMg01no332_e20.g1 PHD_FILE: MSMg01no332_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCCCCCNNNNNNNCCCAGCCTTTGGGAAACATTCGCGCTAAGACTCCT
ATGGGAGAGGATCCGCGGAATTCAGGACTTCCNAAGCCTCTACCCCACCC
CCCANNAGNNNAAGNTANATGAGANTTTCCCTCTAAATACCCAAGNAAGN
AAAATGAATGGATGAATGAATGAATAAATAAATAAATGAAATCTTTTTAA
AAAAAGAACCTACCTGTCATTCCAACACAATGTAGAAACTAGCCACCTGT
TACTCTAACTATTCTTTTGTTTTAGCAATAATCCTCTTACCAATCTGCTC
CCTCCTCAGTACGGTGGCCATGATTATTCTTAAACCGAAAATTACTTTTC
ATCTGGCTATGGCCAATGAGCTTGATGCATGGACAAGACCCTCCATCACT
GAAACAGTGCAGAAGCTCATTATGCAATTCATCACAGTCTTTATTAAACC
TTAGAGAGGCTTTAATTTTTCCTTGTGCCTCAGAAAAAAAAAAAATCCCA
GAATTACTGAATGTCTGGATAATGAAAGTCAGATAGGGCCTTTCAATTCC
AGCGATTACACAAACTACAAGAAACCATGGGATTCTACAAATGATCTGGC
CAGGATAACATAGCTGTGAGCCAGGCCTCACAATTTTAAATTCCTTCTAA
TTCAGCATGCCACGTGGTGGGAGGAGAATGAGAATTTTATCGTAGAGTAT
AGTGCTACATACTGGCAGTCTGGACACTCAAGAAGCAGAGGCTGGGGGAA
TTTGAGTTTCAGGTTTTTCTGAGCCACAGAGAGTAACCCTGTCTCAAAAT
AAAATAAAGTAAAATTAAAACAAAACAAAATTAAAAGGTATTTCCTATGT
AGCATATAATTATACTCCAAAATATGCTAAGTTTTTATTTTGGGAGGCTG
GGAATTTTGTTTTGTTTTGTTTTGTGGTTTACTCCTTTTANTTGCCCTGT
TGTTTGTTTGTTTGTTTCAAGCAGGTTTTTCTTTTTAAGCTGACTGTCCC
AAAAAATTGTTTTTAAACCAGGTGGGCCTCGAATAAAAAAAATGCCGGCC
CCGGCTCCCAAAGGTGGAAACAAAGGAGTGTTCCCTCCCCCCCCAAGGGG
GTGGAAAAAGCCCCCCATTGAATGGGTTGTTAAGTTTTAAAAAGAAAAAA
ATAATTTCTCTCACGGCACCTTAAACCCAATGGGAAATTTATTTTTTTTC
CCGCAAGGGCAAGCAAATCTGGCTTTTTGAGAAAATGTTTTTTATCCCCC
TTAATAAAAAGGAGGGGGGGATGAGTTTTTCCCCCCCCACACACTTGTGG
GGAGGAGAGGTTCCC
CGTCTCTTTTNNAAATGCAAGTGAGGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTCAGGTCCCGAAGGNTNCC
ACACGNNCGGGACTACAGCCCTAAAAAACCCCAGCCANANAANCNCNAGG
GGNAGAAAACGGGCAAACGGCACNNNAACGCCAGGACNANNNCCGGGGNG
NNNNNNNNCCCANGANAACACGGNGGGGGGGGGGGGGNNNNNNNNNNNCN
NNNNNNNNNNNCNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNN
NNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNN
NCNNNNCCNCNNNNCCCNNNCCCCCCCCCCCCCCNNCCCCCCCCCCCCCN
CCCCCCCCCCCNNNCNCCCCCCCCCCCCCNCNNNNCCCCCCCCCCCCCCN
CCNNCCCCCNNCCCCCCCCCCCCCCCCCCCCCCCNCCCCCNCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCNCCCCCCCCCCC
CCCCCCCCCCCCNCCCCNCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCNCCCCCCCCCCCCCCCCNNCCCCCCNCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCC
CCCNCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCC
CCCCCCCCCCCCCCCCNNCCCCCCCCCCCCCCNCCCNCCCCCNCCNCCCC
CCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCC
CCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCACNCCCCC
CCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCACC
CCCCCCCNNCCCCCACCCACCCCAACACCCCACCCACACCACCCACCCCC
CCNCAACCACCCCAAACCACCACCCCANCACACCCCCCCAAACCAACAAA
AACCCAACACACACACCCACCCACCACACCCACAAAACACCCACCACAAC
AANCACAACCCNCCAACCAACACAACCACCCACCCAACCACCAAAACCAA
CCACACCCGAAAACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_e20.b1 MSMg01no332_e20.b1 CHROMAT_FILE:
MSMg01no332_e20.b1 PHD_FILE: MSMg01no332_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:36 2005
         (500 letters)



>mm_chr6_94302337_94303237
          Length = 901

 Score =  938 bits (485), Expect = 0.0
 Identities = 497/501 (99%), Gaps = 1/501 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatgaatggatgaatgaatgaataaataaataaatgaaatctttttaaaaaaagaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaatgaatggatgaatgaatgaataaataaataaatgaaatctttttaaaaaaagaacc 682

                                                                       
Query: 61  tacctgtcattccaacacaatgtagaaactagccacctgttactctaactattcttttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacctgtcattccaacacaatgtagaaactagccacctgttactctaactattcttttgt 622

                                                                       
Query: 121 tttagcaataatcctcttaccaatctgctccctcctcagtacggtggccatgattattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttagcaataatcctcttaccaatctgctccctcctcagtacggtggccatgattattct 562

                                                                       
Query: 181 taaaccgaaaattacttttcatctggctatggccaatgagcttgatgcatggacaagacc 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaccggaaattacttttcatctggctatggccaatgagcttgatgcatggacaagacc 502

                                                                       
Query: 241 ctccatcactgaaacagtgcagaagctcattatgcaattcatcacagtctttattaaacc 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 ctccatcactgaaacagtgcagaagctcattaagcaattcatcacagtctttattaaacc 442

                                                                       
Query: 301 ttagagaggctttaatttttccttgtgcctcag-aaaaaaaaaaaatcccagaattactg 359
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 ttagagaggctttaatttttccttgtgcctcagaaaaaaaaaaaaatcccagaattactg 382

                                                                       
Query: 360 aatgtctggataatgaaagtcagatagggcctttcaattccagcgattacacaaactaca 419
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtctggataatgaaagtcagatagagcctttcaattccagcgattacacaaactaca 322

                                                                       
Query: 420 agaaaccatgggattctacaaatgatctggccaggataacatagctgtgagccaggcctc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaccatgggattctacaaatgatctggccaggataacatagctgtgagccaggcctc 262

                                
Query: 480 acaattttaaattccttctaa 500
           |||||||||||||||||||||
Sbjct: 261 acaattttaaattccttctaa 241


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 901
Length adjustment: 10
Effective length of query: 490
Effective length of database: 891
Effective search space:   436590
Effective search space used:   436590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)