BAC Information

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BAC

Clone NameMSMg01-332F05
Chromosome6 (Build37)
Map Location 128,985,085 - 128,985,742
singlet/doubletsinglet
Overlap genenone
Upstream geneTspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f
Downstream geneKlrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332F05.T7 (MSMg01no332_f05.b1)MSMg01-332F05.TJ (MSMg01no332_f05.g1)
ACCAG448387AG448388
length1,3091,296
length of high quality
(start - end)
654 (93 - 746)763 (138 - 900)
definitionCHROMAT_FILE: MSMg01no332_f05.b1 PHD_FILE: MSMg01no332_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:39 2005CHROMAT_FILE: MSMg01no332_f05.g1 PHD_FILE: MSMg01no332_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGCAGTTCATGGNNNNACATTGGNCGCTAAGACTCCTAAGGGAGAGG
ATCCGCGGAATTCAGCAAAAGCTTGTGCAACTTTAACACACACCTACAGC
AACAACTTTCAACATGTTAGCATTTAAAGGAAGTTCTTTCAACCTGACAA
GCAGTATCTATGATTAACCAAAACAAGAAGCCAACTACAGAGAGCATGAA
TGTTTTCTGCCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA
GCTGCCAGATAATTTTTTTATCTTTTTATTCTTATTCAGAGACCGGAGGA
GGGAGTTTTCATTACACTAAACCCAATGTATTTTTGGTACATAGGTAAAG
CTTTTGGTATTGTAACCCCAAAAATCTTTGCTTAAGTCAAGCTCTCATTC
AGAAATTTATTTTCTAACCTTTATAGTAGATTTAAGTTTTTAGGCTTCAT
GTTTGTGTTTGTGATCCATTTTGATTCAGTTGTACACTGTATGAGGTTTG
AGCTTATAACCTTGGGATGCTTCAGTATGGGAAGCAATTGTCTTAGCATC
CTATGCAGAAAAGATAGTGACCTTTCTCTACCTAAGAACTGTCCACTCGG
CCACTTTACAGTGCACATGCATACACACCTAATAAAATGTATACACCTTA
TAAACACTCATTTTAAAAAACGATCCAAAAATTGAACAAAAATGGCACAT
GCTTAGTAAATACACACATTAAACCTGCTCAATGTTACTAAGCATAGGGT
GAAATAGAGAAAAGCCATTAGGATTTTTTGAAAAAGGAGATTACTTTGAC
TATAAGCCCTGGTCCTCCTATTCAGAAAGGAATTGACTGCGTTTACTTTT
AAGACCTGCCTGTGTTTACAGCAGCTTTGTGAGTTAAACTTCGCTTTTGG
TAAAACTCCAATTTCCCTGAAGCTGTGCCGAACAAACCCAAATTAATTTT
TCTAGGGAAAAGAATTGAAAGGAAAACTGGAGGGGTGGGTGGCCCCGCCC
CAATCTCTGCTGAATAAATATCCTCACCTTCTGTTTCTCAGAGCCCCAAC
AAAGAAAAAGGGGATCTCCTTAACCTTAAAATTTCCCGCCTTTCTTGTCT
TGGGCCCAAAAACCCTGGGGAAGGGGTGGTTTATACCGGGCGAGTAACCC
GGGCCCCCCAGGAAAAAAAAAACGTAAAGCCCCCTTAATGGGCGGCAATG
GTCTTTCTCCCCCTCCCCAAAAAACACCCCCAGAACCCTTTAANGTAATT
TTGTNAGTGTGAAGAAATCAACCGAGGTTTGACGGAAACCGNNNNNNTTT
TANATNTTA
NCCATACCTNNNNNNAACGCATGGAGGCTGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGCTGACGAATACCG
AATGGCAGAGAAACCCCTGACCATATGTTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACACTGAGATTCCACTTCACTCCTGTCAGAATG
GCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTTGAGA
AAGGGGAACACTCCTCCATTGTTGTTGGGATTGCAAGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCG
GAGGATCCTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAAC
CGTTAAGAAGGACACTTGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGTCAGAAGCTGGAAAGAACCCACATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATTTACACAATGGAATACTACTCAGCTACTAAAAA
AAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCA
TCCTGAGTGAAGTAACCCAATCACAAAGGAACTCGCACAATATGTACTCA
CTGATAAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGAT
ACAACTTGCCAAACGCATGAAATTCAAGAAGAACGAAGACCAAAGTGTGG
ACATTTTACCCTTTCTTAGAAATGGGAACAAAACACTCATGGAAGGAGTT
ACAGAGAGAAAATTTGGAGCTGTGACGAAAGGATGGACCATCTAGTGATT
GCCATATGCAGGGATCCATCCCATAATCAGCTTCCAAATGCTGACACCAT
TGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGCTATAGCTCTCTCT
TGTGAGACTATGCCGGGGCCTAGCAAAACAGAAATGGATGATACAATCAG
CTATTGAATGGTCCACACGCCCCTAATGGAGAAGCTAAAGAAATTACCCA
AGGAGCTAAGGGAACTGCAACCCTATAGTGGAACAACCATATGAACTTAC
CCGTACCCGGGAACTCTTGGTTTTTGCGCAAATGAACACAAAAAAGCCCA
AAGGCTCCCCCTGAAAAAAAGCCCCTTGGAATCGTCAACTTTATTTCCCC
CAACAGGGTACACCGGGCCACAAAGAGACCGGGGGGTTGTGTATTACGCT
CCTCTCTATCACTTTTTTCCCTCTCCTTCCTTCTATACACTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_f05.b1 MSMg01no332_f05.b1 CHROMAT_FILE:
MSMg01no332_f05.b1 PHD_FILE: MSMg01no332_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:39 2005
         (654 letters)



>mm_chr6_128984889_128985942
          Length = 1054

 Score = 1199 bits (620), Expect = 0.0
 Identities = 647/658 (98%), Gaps = 4/658 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctacagcaacaactttcaacatgttagcatttaaaggaagttctttcaacctgacaagc 60
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 197 cctacagcaacaactttcaacatgttaggaattaaaggaagttctttcaacctgacaagc 256

                                                                       
Query: 61  agtatctatgattaaccaaaacaagaagccaactacagagagcatgaatgttttctgccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agtatctatgattaaccaaaacaagaagccaactacagagagcatgaatgttttctgccg 316

                                                                       
Query: 121 agagagagagagagagagagagagagagagagagaga----agctgccagataatttttt 176
           |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 317 agagagagagagagagagagagagagagagagagagagagaagctgccagataatttttt 376

                                                                       
Query: 177 tatctttttattcttattcagagaccggaggagggagttttcattacactaaacccaatg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tatctttttattcttattcagagaccggaggagggagttttcattacactaaacccaatg 436

                                                                       
Query: 237 tatttttggtacataggtaaagcttttggtattgtaaccccaaaaatctttgcttaagtc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tatttttggtacataggtaaagcttttggtattgtaaccccaaaaatctttgcttaagtc 496

                                                                       
Query: 297 aagctctcattcagaaatttattttctaacctttatagtagatttaagtttttaggcttc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aagctctcattcagaaatttattttctaacctttatagtagatttaagtttttaggcttc 556

                                                                       
Query: 357 atgtttgtgtttgtgatccattttgattcagttgtacactgtatgaggtttgagcttata 416
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 557 atgtttgtgtttgtgatccattttgattcagttgtacactgcatgaggtttgcgcttata 616

                                                                       
Query: 417 accttgggatgcttcagtatgggaagcaattgtcttagcatcctatgcagaaaagatagt 476
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 617 accttgggatgcttcactatgggaagcaattgtcttagcatcctatgcagaaaagattgt 676

                                                                       
Query: 477 gacctttctctacctaagaactgtccactcggccactttacagtgcacatgcatacacac 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gacctttctctacctaagaactgtccactcggccactttacagtgcacatgcatacacac 736

                                                                       
Query: 537 ctaataaaatgtatacaccttataaacactcattttaaaaaacgatccaaaaattgaaca 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ctaataaaatgtatacaccttataaacactcattttaaaaaacgatccaaaaattgaaca 796

                                                                     
Query: 597 aaaatggcacatgcttagtaaatacacacattaaacctgctcaatgttactaagcata 654
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 797 aaaatggcacatgcttagtaaatacatacattaaacctgctcaatgttactaagcata 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)