Query= MSMg01no333_a13.b1 MSMg01no333_a13.b1 CHROMAT_FILE:
MSMg01no333_a13.b1 PHD_FILE: MSMg01no333_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:06 2005
(580 letters)
>mm_chr6_117953696_117954676
Length = 981
Score = 1011 bits (523), Expect = 0.0
Identities = 566/585 (96%), Gaps = 14/585 (2%)
Strand = Plus / Plus
Query: 4 gaattctcccattcctcgcccctgggaaaaagaaaaaaaaggtttagtgtttagattttt 63
||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 203 gaattctcccattccccgggcctgggaaaaagaaaaaaaag-tttagtgtttagattttt 261
Query: 64 aaagattattgggatttttgaactctaaccgaatgcatttgtattatgagatggtcatgg 123
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 262 aaagattattgggatttttgaactctaaccgaatgcatttatattatgagatggtcatgg 321
Query: 124 gccaggatcggag---catcatggtttagatggaaaatttcccctctaataagctcgccc 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gccaggatcggaggagcatcatggtttagatggaaaatttcccctctaataagctcgccc 381
Query: 181 atgtgtttgaacacttgtttaccagctgatggtgctgttttgggagcttgtggacccttt 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 382 atgtgtttgaacacttgtttaccagctgatggtgctgtttggggagcttgtggacccttt 441
Query: 241 gggaagtagagccttgttggaggaagtggatctctgggatgggagagtggggggccttga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gggaagtagagccttgttggaggaagtggatctctgggatgggagagtggggggccttga 501
Query: 301 ggttcatagcccacgcccacttcctgattcatctgtaccttctggtttactgagatataa 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 502 ggttcatagcccacgcccacttcctgattcatctgtacct-ctggtttactgagatataa 560
Query: 361 gtaagaagcctcaccg----cccgcatgatcatgggggctagcctgctac-aggatggat 415
||||||||||||| | ||| ||||||||||||||||||||||||| |||||||||
Sbjct: 561 gtaagaagcctca--gtgttccc--atgatcatgggggctagcctgctaccaggatggat 616
Query: 416 gagggctagcctgctaccaggatggatgtaccccatccacctatgaaccaaaataaactc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gagggctagcctgctaccaggatggatgtaccccatccacctatgaaccaaaataaactc 676
Query: 476 attcctttaaaagaatggttctaatccaatgcctgagtgtaagcaaattggaagctaatt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 attcctttaaaagaatggttctaatccaatgcctgagtgtaagcaaattggaagctaatt 736
Query: 536 taatgtttgtatgtatgtatgtatgtatgtatgtatgtatgtatg 580
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 taatgtttgtatgtatgtatgtatgtatgtatgtatgtatgtatg 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space: 553470
Effective search space used: 553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_a13.g1 MSMg01no333_a13.g1 CHROMAT_FILE:
MSMg01no333_a13.g1 PHD_FILE: MSMg01no333_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:07 2005
(345 letters)
>mm_chr6_118114270_118115013
Length = 744
Score = 629 bits (325), Expect = 0.0
Identities = 340/345 (98%), Gaps = 1/345 (0%)
Strand = Plus / Minus
Query: 1 ctcctgaacgactcttcaaccttctgaagacaggccacaggatggagaggccagacaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ctcctgaacgactcttcaaccttctgaagacaggccacaggatggagaggccagacaact 485
Query: 61 gcagcgaggaaatgtgagtgggctttttctgcccagccagcctctgaccctcacactctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gcagcgaggaaatgtgagtgggctttttctgcccagccagcctctgaccctcacactctg 425
Query: 121 gaccctggatggggaagtataatagccgtctgttctcttctcgttcccaagaagcctggt 180
||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 424 gaccctggatgaggaagtataacagccgtccgttctcttctcgttcccaagaagcctggt 365
Query: 181 gctaccaaccctgataagctgggtgatggggagagacagggcagaggccagaaagccatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gctaccaaccctgataagctgggtgatggggagagacagggcagaggccagaaagccatc 305
Query: 241 aacaggcgtgagataaaagagatgctggggcccctcccccatgggggctggtgggcttcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aacaggcgtgagataaaagagatgctggggcccctcccccatgggggctggtgggcttcc 245
Query: 301 taggaacttctggggggttgatggaactggcaagagcccatggcc 345
||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 244 taggaacttct-gggagttgatggaactggcaagagcccatggcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 744
Length adjustment: 9
Effective length of query: 336
Effective length of database: 735
Effective search space: 246960
Effective search space used: 246960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
