TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAATCTCTCTGTCAGAAGCTCTGGGCCACGACATCAGTCAGTA
GCAAAGAAAAACCAAACATGCCCAGTTCTGGGCTCGCAGTCCAGTGCACT
CATTATCCATTGCAGCATGCTGGGCAGCTTAAAATAGACAGTCAAAGATT
TACCTACCAAACATAGGAATTGACAGACATTTTCTTTTAAAGTGATAATA
TACCCTTTGTATCAAGTTGAAAATGCTTATGGTCTATTTCTCTCAAAGTA
GGTTGGCGTCCATTGTATAAAATGATCAAATGCACTCTACTTTTAAAATT
TGTTTTACCCAAAATTTCAAATACCAGACACAGTAACAAAGGAACCTTTG
TAGGCTGTCACCCAGAAACGAACCTCATCTTTTAACCTAAGTGTCTTAGC
ATTTGCCTTTGGAAGATAAGTCATTCTGAATCATTCTTTCACTATTAGCC
TAACCACCATTCCTTAATATCACAAATGACCATACAGAGTTTAAAAATTC
CTCATTGACTCATGTTCTTTTTTCAATAAAATATAGATTCCACAGAAGTT
ATTGGGAAACAACTGAACATCTTTCTGTGTAGTTTTCCATATATCTGCAT
TTTGCAATTATAGTCTTAAATTGAGAAAAGTCACAATAATCTGATTAATA
TAACTATTTAATTTCAAGTAGCTTGGAGGCTTTTGTTTGTTTTTTGGGGG
GGCTTTAT

NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTATATATTTTGGATATTAGCCC
TCTACTGGATGTGGGGTTAGTGATTTTTTTTTCTCAATCAGCAGGTTGCT
GATTTGTCCTATTGACTGTGTCCTTTGCCTTACAGAAGCTTTCCAGTTTC
ATGAGGTCCTAATCATCAATTCTTGATCATACAGCCTGAGCCACTGGAGT
TCTGATTAGGAAATTCTGACACCCCACCCCATGCTAATGAGTTTGAGTCT
CTTTCCCACTTTCTCATCTATTAGATTCAGTTTTATGTTGTGTACCAGAG
AACTGGGAGGTGATGGACAGGACTCAAAGGGAGGGACCTTACATGAAATG
CCCAACAGTGGGGAGAGGGAACTCCCACAGTCCATCTCCAGTAGAAAGAC
AGAGCATCAAGTAGAGGGATGGGGTTGCCATCACATAGTCAAAACCTCTG
ACCCAGAATTGTTTCTGTCTAAAAGAACTGCAGAAACAGAAGTGGAGAAG
AGACTGAGGGAAAAGAGGTCCAGGGACTGGCCCAAATTGGGATCCAGGTG
AAGGGGAAGCCCCAAGGCCTGATACTATTACTGATGCTATGATTTGCTCA
CACACAGGACCCTGCCCTCCAAGAGGGTCCAATCAGCCCTGACTGAGACA
GAGGCAGATACTTACACTCACCTAATGGACAGAAGCCAGTGACTT

Query= MSMg01no333_a20.b1 MSMg01no333_a20.b1 CHROMAT_FILE:
MSMg01no333_a20.b1 PHD_FILE: MSMg01no333_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:08 2005
         (620 letters)



>mm_chr6_35907520_35908539
          Length = 1020

 Score = 1168 bits (604), Expect = 0.0
 Identities = 616/620 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctctgggccacgacatcagtcagtagcaaagaaaaaccaaacatgcccagttctgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctctgggccacgacatcagtcagtagcaaagaaaaaccaaacatgcccagttctgggc 260

                                                                       
Query: 61  tcgcagtccagtgcactcattatccattgcagcatgctgggcagcttaaaatagacagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcgcagtccagtgcactcattatccattgcagcatgctgggcagcttaaaatagacagtc 320

                                                                       
Query: 121 aaagatttacctaccaaacataggaattgacagacattttcttttaaagtgataatatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagatttacctaccaaacataggaattgacagacattttcttttaaagtgataatatac 380

                                                                       
Query: 181 cctttgtatcaagttgaaaatgcttatggtctatttctctcaaagtaggttggcgtccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttgtatcaagttgaaaatgcttatggtctatttctctcaaagtaggttggcgtccat 440

                                                                       
Query: 241 tgtataaaatgatcaaatgcactctacttttaaaatttgttttacccaaaatttcaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtataaaatgatcaaatgcactctacttttaaaatttgttttacccaaaatttcaaata 500

                                                                       
Query: 301 ccagacacagtaacaaaggaacctttgtaggctgtcacccagaaacgaacctcatctttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagacacagtaacaaaggaacctttgtaggctgtcacccagaaacgaacctcatctttt 560

                                                                       
Query: 361 aacctaagtgtcttagcatttgcctttggaagataagtcattctgaatcattctttcact 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 aacctaagtgtcttagcatttgcctttggaagataagtcattctgaatcattgtttcact 620

                                                                       
Query: 421 attagcctaaccaccattccttaatatcacaaatgaccatacagagtttaaaaattcctc 480
            |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 gttagactaaccaccattccttaatatcacaaatgaccatacagggtttaaaaattcctc 680

                                                                       
Query: 481 attgactcatgttcttttttcaataaaatatagattccacagaagttattgggaaacaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attgactcatgttcttttttcaataaaatatagattccacagaagttattgggaaacaac 740

                                                                       
Query: 541 tgaacatctttctgtgtagttttccatatatctgcattttgcaattatagtcttaaattg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgaacatctttctgtgtagttttccatatatctgcattttgcaattatagtcttaaattg 800

                               
Query: 601 agaaaagtcacaataatctg 620
           ||||||||||||||||||||
Sbjct: 801 agaaaagtcacaataatctg 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)