Query= MSMg01no333_c08.b1 MSMg01no333_c08.b1 CHROMAT_FILE:
MSMg01no333_c08.b1 PHD_FILE: MSMg01no333_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:15 2005
(349 letters)
>mm_chr6_53340003_53340752
Length = 750
Score = 588 bits (304), Expect = e-172
Identities = 337/348 (96%), Gaps = 3/348 (0%)
Strand = Plus / Minus
Query: 1 cacagaaggcttcactcgggagccatgaataactcacagtgag-ttcgcctcaagccaca 59
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 547 cacagaaggcttcactcgggagccatgaataactcacagtgagctt-gcctcaagccaca 489
Query: 60 -cccccaacggaggcggcatggaactgttcctggtaaaagacctttaaggaaatcaatgg 118
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 488 ccccccaatggaggcggcatggaactgttcctggtaaaagacctttaaggaaatcaacag 429
Query: 119 cacacacttacaaccagtctatcagcaagagtgtagagacagatttgaccatacgtatct 178
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 428 cacgcacttacaaccagtctatcagcaagagtgtagagacagatttgaccgtacgtatct 369
Query: 179 ttatcttaatccaagaggcccactttgactgtctggaaattgaatgacactgtttcctca 238
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttatcttaatctaagaagcccactttgactgtctggaaattgaatgacactgtttcctca 309
Query: 239 aacagtcttctacatatatgaactgatcaaaagaattaaacttattagtccaactagttt 298
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aacagtcttctacatatacgaactgatcaaaagaattaaacttattagtccaactagttt 249
Query: 299 attaattaaactgcattgtgcaggactcccgggtctcccttgctattc 346
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 attaattaaactgcattgtgcaggactcccgggtctcccttgctattc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 750
Length adjustment: 9
Effective length of query: 340
Effective length of database: 741
Effective search space: 251940
Effective search space used: 251940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_c08.g1 MSMg01no333_c08.g1 CHROMAT_FILE:
MSMg01no333_c08.g1 PHD_FILE: MSMg01no333_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:15 2005
(347 letters)
>mm_chr6_53172506_53173255
Length = 750
Score = 623 bits (322), Expect = 0.0
Identities = 344/354 (97%), Gaps = 7/354 (1%)
Strand = Plus / Plus
Query: 1 agtaacacacaagcctggaagtcttttgctagtgtctggtcataaattcctctctctggc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 agtaacatacaagcctggaagtcttttgctagtgtctggtcataaattcctctctctggc 256
Query: 61 catggaagctgtgagagtccagtgtgagagtataagaatggaaaccagatatttgtcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 catggaagctgtgagagtccagtgtgagagtataagaatggaaaccagatatttgtcttg 316
Query: 121 taatgtcaagagctgactgcaaaaggaaggccaagaaatggagggaggcctgattcctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 taatgtcaagagctgactgcaaaaggaaggccaagaaatggagggaggcctgattcctgc 376
Query: 181 tgcctcttttggggcgtgcgcgcgtg--cgcacgcgcacacacacacacacacacacaca 238
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 377 tgcctctgttggggcgtgcgcgcgtgtgcgcacgcgcacacacacacacacacacacaca 436
Query: 239 ca--cactacctgaagcaagtcttaattgggattccccagttaggtaagataatactttt 296
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 437 catacactacctgaagcaaggcttaattgggattccccagttaggtaagataatactttt 496
Query: 297 ttt---ctctctctttcttttaattcaatttttagtttatgttttcaggtagca 347
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttttctctctctctttcttttaattcaatttttagtttatgttttcaggtagca 550
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 750
Length adjustment: 9
Effective length of query: 338
Effective length of database: 741
Effective search space: 250458
Effective search space used: 250458
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
