BAC Information

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BAC

Clone NameMSMg01-333G05
Chromosome6 (Build37)
Map Location 143,486,415 - 143,486,762
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
Downstream geneSox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333G05.T7 (MSMg01no333_g05.b1)MSMg01-333G05.TJ (MSMg01no333_g05.g1)
ACCAG449158AG449159
length750716
length of high quality
(start - end)
44 (70 - 113)348 (77 - 424)
definitionCHROMAT_FILE: MSMg01no333_g05.b1 PHD_FILE: MSMg01no333_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:33 2005CHROMAT_FILE: MSMg01no333_g05.g1 PHD_FILE: MSMg01no333_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTGTATTTGCCCCGCTCATCGACTCCTANATGCCGAGCTCCACGGAATTC
CTGTGACTACAATGACTAAATTAAAAATTCAAATCAAAGACGAGCAAGAG
AGACAGAGAGGGTAGAGCCAGAGGGAGAGGGAGAGGGAGTTGGAGATGNT
TNTGNNNNGNGNTNGGAGTTTAGNNGGGGATTTGATAGTGATTTTTATTA
TGTTATTTNATTTTTTCTTTATAAGAATAAAATTATGAANAGNGTTTTTT
GACCCGGGGGATATTTCTTAGTAATATCTCCTCCCCCTACCCCCCCCTGC
TCTACGCCCCCTTTTTTTTTTTTTTCCCCTCCCCCCGCNAANANNACAAA
AACCCCCACNACCCCCCCCCCCCCTTCCTTTTCCTCTTCCCCTTCCCTTT
TCCCCTTTNTTTTNCCCCAAACATCCCCCCCCTTTTAANATNTANNANNA
NAACCTTTGCTCTTCATTCCTCTTTCTCTCCCTTTCTCCCTTTTTTCCTC
TCCCCCTCCGCCTCTCTCCTCTCTTCTCTCTCCTTTTCTTTTCCCCCCTT
CTTTCTTTCTCCTTTCTTCCCCCCCCCTTTTTCCCCCCCTTCCCTTCTTC
TCCCTTTCTTTCCTTTTCTCCTTTCCCCTTTTCCTCCCCTCTTTTTCTTC
TGTCCCCCTTTCCTCCTTTTCCTTCTTCTTTCTTTCTCCCCTCCTCTCTC
TTTTCCCCTTCCTTCTCTTTCTCTCTTCTCTCCTTTTCCTTTTTTTTCTG

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAAGCTTTGGTCTGGGATGTCCA
CAGTCAATGCATAGGCATGTGTCACCTTCAAATAAGAACAACGGCCTTGG
TGACAAAAAAAAAAAAATGCTCAGAGTTTAGTTGGAGATTTGAAAGGGCA
TTATTATTAAGCCAATACATTATTTCTTCATAAGAATAAAATCATGTACA
GCTCAAAATAACTAAAGGGCTACATCTTAATAATAGCAAATCCCAATAGC
AACAAATGCCTTATGCTCTATTAAAAACACATTCATGTGCTCTGAATTAT
ATTAATAAAACATGTTATAAAAATGTTAAACAATGAATTATAAGTACTTA
AAGATAAAACTTAAATATACACACCACACCCCCGCCCTAATACAATCTAC
TTTTTTAAAATTGAAGATTGTACCAGCGGCAATTCAATGAACTCAACACT
AACACAGAAAATGAGGGACGTTCAATACTATTATTATTGTACTATAACTA
ATTTATTCCAATGGCTAAACCATGCTTTTTAAGAATATGTTAGGCATTGA
ATTGGCTCTTTCAGAACACTACAAAGTATTATGAAATACTGAGGTAGAAT
TTCTAGATGGTGGCTAGTGGGTCAGAAGATTATTAAATACTTTCAGCTCT
TGACACAAAATATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_g05.g1 MSMg01no333_g05.g1 CHROMAT_FILE:
MSMg01no333_g05.g1 PHD_FILE: MSMg01no333_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:33 2005
         (348 letters)



>mm_chr6_143486215_143486962
          Length = 748

 Score =  673 bits (348), Expect = 0.0
 Identities = 348/348 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataagctttggtctgggatgtccacagtcaatgcataggcatgtgtcaccttcaaataag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ataagctttggtctgggatgtccacagtcaatgcataggcatgtgtcaccttcaaataag 489

                                                                       
Query: 61  aacaacggccttggtgacaaaaaaaaaaaaatgctcagagtttagttggagatttgaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aacaacggccttggtgacaaaaaaaaaaaaatgctcagagtttagttggagatttgaaag 429

                                                                       
Query: 121 ggcattattattaagccaatacattatttcttcataagaataaaatcatgtacagctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggcattattattaagccaatacattatttcttcataagaataaaatcatgtacagctcaa 369

                                                                       
Query: 181 aataactaaagggctacatcttaataatagcaaatcccaatagcaacaaatgccttatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aataactaaagggctacatcttaataatagcaaatcccaatagcaacaaatgccttatgc 309

                                                                       
Query: 241 tctattaaaaacacattcatgtgctctgaattatattaataaaacatgttataaaaatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tctattaaaaacacattcatgtgctctgaattatattaataaaacatgttataaaaatgt 249

                                                           
Query: 301 taaacaatgaattataagtacttaaagataaaacttaaatatacacac 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 taaacaatgaattataagtacttaaagataaaacttaaatatacacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)