BAC Information

Click to search

BAC

Clone NameMSMg01-333N12
Chromosome6 (Build37)
Map Location 42,528,374 - 42,750,453
singlet/doubletdoublet
Overlap geneEapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452
Upstream geneEphb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896
Downstream geneOlfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333N12.T7 (MSMg01no333_n12.b1)MSMg01-333N12.TJ (MSMg01no333_n12.g1)
ACCAG449491AG449492
length737724
length of high quality
(start - end)		649 (45 - 693)347 (72 - 418)
definitionCHROMAT_FILE: MSMg01no333_n12.b1 PHD_FILE: MSMg01no333_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:06 2005CHROMAT_FILE: MSMg01no333_n12.g1 PHD_FILE: MSMg01no333_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,749,808 - 42,750,453)(42,528,374 - 42,528,723)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATGACAGAAGAGCGCGGAA
TTCTCCAGCTATACAGATGTCATGTTCAATTTTTCTTTCTGTCTACTCAG
GGACTTTTAGTTTCAATTTAGAAAATAGAAAGTGCAAATAGATTTTTGAG
TTTCAAGGAAATGTCAAAAACTCCATTTCAGAGTCTGTAAAGTTTTAAAA
GTAAAACCTATGTGACCATGTTTCATCTTTAAAATCTTCGCATGATTGTC
TCTGCAGCTTAGAATACAGGAAGGAGTGATCCCCAGCTTTATGTTCTTCT
TCCCAGAGAGTATCAAAGAAGGGGTCTTCACACTATCTGTGAAGACACAA
GTCAAATTCAAAGATGCATTAGCTAGATTCTCTCCTAAGCATAATAACCA
ATACCAATACAGATATTATCTACAACTATGAGACCAAGGAAATCTGGCAG
TGTTTTCTCCCTGACTGTGTTTATGTTTCCTTACTAAGAGGCAGGGCTCA
GAGGCTAACTAGGAAGAGATGGACAATAACTCAACTGAATTAGCTTATTG
ATATAACTGTTGATTATATCTGCCTCTTAATCCTCCCTTTCTTCTTTCTC
TCTCTTCATCACTTTTCTCTCTGTCTGTCTCTGTCTCTCTCTCTCTCTCT
CACACACACACACACACACACACATACACACACTAGTAGTTATGTATAAC
TATCACACAGTAATGCTTAATCAGGCTTAATTTATTG

TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTACTCGTCCTGCAGCATTTGAGAGATT
CTCTTGAAGTTAAAGTAAGATCTCATAATTCAACTCTTAGTAGGCCAATA
GTTCCTTCTTCCTCTCAGAATAAACTCCAGCCATTCCCATGGTGTTCAAA
GTCTGGATGTTTAATTCTGAAAATTAAAGACATGATGATGACGTCAATTC
TTACTGCTCTGGTAACGTTGGAATTCTACTGAGTACAATAAAAAATGAAA
GAATATAACAGGGACACAAAGGAAAAATGAAAGAATTTTTACCTTTGAAG
ATGACATGATTATACATTTAGAAAACATGAAAGATTCTACAAGAATGGTA
TAATACTAAAAAGTAACACCACTAAGGTGAATGAAAAGGAAGTTATTACA
TCTAATATAGAAAACCAATTATACTATACCTGTGTTCTGTATGCCGAGAA
ACACTGCATACCCGTGAGTCATCTTCACAAAACTTTCACAAGATCAGGCC
TCTCAACATTTCAGCAATCATGGAGTTGGGGTGCCCCCTGAGGTCCTCCT
TTGTAGTAGAAATAGAAATGGAAGTTTCAGACACTGCAGCGTCCTACCAA
TCTTTTAAAGAAAGCTAACACTTGGATTCCTCAAACGTTCCATTAAACAG
TAAGTGAAGCAACCCTAGTAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_n12.b1 MSMg01no333_n12.b1 CHROMAT_FILE:
MSMg01no333_n12.b1 PHD_FILE: MSMg01no333_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:06 2005
         (649 letters)



>mm_chr6_42749716_42750764
          Length = 1049

 Score = 1203 bits (622), Expect = 0.0
 Identities = 640/646 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctccagctatacagatgtcatgttcaatttttctttctgtctactcagggacttt 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gaattctccagctataaagatgtcatgttcaatttttctttctgtctactcagggacttt 679

                                                                       
Query: 64  tagtttcaatttagaaaatagaaagtgcaaatagatttttgagtttcaaggaaatgtcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tagtttcaatttagaaaatagaaagtgcaaatagatttttgagtttcaaggaaatgtcaa 619

                                                                       
Query: 124 aaactccatttcagagtctgtaaagttttaaaagtaaaacctatgtgaccatgtttcatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaactccatttcagagtctgtaaagttttaaaagtaaaacctatgtgaccatgtttcatc 559

                                                                       
Query: 184 tttaaaatcttcgcatgattgtctctgcagcttagaatacaggaaggagtgatccccagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tttaaaatcttcgcatgattgtctctgcagcttagaatacaggaaggagtgatccccagc 499

                                                                       
Query: 244 tttatgttcttcttcccagagagtatcaaagaaggggtcttcacactatctgtgaagaca 303
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttatgttcttcttcccaaagagtatcaaagaaggggtcttcacactatctgtgaagaca 439

                                                                       
Query: 304 caagtcaaattcaaagatgcattagctagattctctcctaagcataataaccaataccaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caagtcaaattcaaagatgcattagctagattctctcctaagcataataaccaataccaa 379

                                                                       
Query: 364 tacagatattatctacaactatgagaccaaggaaatctggcagtgttttctccctgactg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tacagatattatctacaactatgagaccaaggaaatctggcagtgttttctccctgactg 319

                                                                       
Query: 424 tgtttatgtttccttactaagaggcagggctcagaggctaactaggaagagatggacaat 483
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgtttatgtttcctcactaagaggcagggctcagaggctaactaggaagagatggacaat 259

                                                                       
Query: 484 aactcaactgaattagcttattgatataactgttgattatatctgcctcttaatcctccc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aactcaactgaattagcttattgatataactgttgattatatctgcctcttaatcctccc 199

                                                                       
Query: 544 tttcttctttctctctcttcatcacttttctctctgtctgtctctgtctctctctctctc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 198 tttcttctttctctctcttcatcacttttctctctgtctgtctctgtctctgtctctctc 139

                                                         
Query: 604 tctcacacacacacacacacacacacatacacacactagtagttat 649
           |||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tctctctcacacacacacacacacacatacacacactagtagttat 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no333_n12.g1 MSMg01no333_n12.g1 CHROMAT_FILE:
MSMg01no333_n12.g1 PHD_FILE: MSMg01no333_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:06 2005
         (347 letters)



>mm_chr6_42528174_42528920
          Length = 747

 Score =  630 bits (326), Expect = 0.0
 Identities = 342/350 (97%), Gaps = 5/350 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctactcgtcctgcagcatttgagagattctcttgaagttaaagtaagatctcataattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctactcgtcctgcagcatttgagagattctcttgaagttaaagtaagatctcataattc 260

                                                                       
Query: 61  aactcttagtaggccaatagttccttcttcctctcagaataaactccagccattcccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactcttagtaggccaatagttccttcttcctctcagaataaactccagccattcccatg 320

                                                                       
Query: 121 gtgttcaaagtctggatgtttaattctgaaaattaaagacatgatgatgacgtcaattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttcaaagtctggatgtttaattctgaaaattaaagacatgatgatgacgtcaattct 380

                                                                       
Query: 181 tactgctctggtaacgttggaattctactgagtacaataaaaaa-----tgaaagaatat 235
           ||||||||||||||||||||||||||||||||||||||||||||     |||||||||||
Sbjct: 381 tactgctctggtaacgttggaattctactgagtacaataaaaaaagaaatgaaagaatat 440

                                                                       
Query: 236 aacagggacacaaaggaaaaatgaaagaatttttacctttgaagatgacatgattataca 295
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 aacagggacacaaaggaaaaatgaaagaatttttaactttgaagatgacatgattataca 500

                                                             
Query: 296 tttagaaaacatgaaagattctacaagaatggtataatactaaaaagtaa 345
           |||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 501 tttagaaaacatgaaagattctacaagaatggcacaatactaaaaagtaa 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |