Query= MSMg01no334_a08.b1 MSMg01no334_a08.b1 CHROMAT_FILE:
MSMg01no334_a08.b1 PHD_FILE: MSMg01no334_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:19 2005
(678 letters)
>mm_chr6_61617755_61618842
Length = 1088
Score = 872 bits (451), Expect = 0.0
Identities = 524/575 (91%), Gaps = 44/575 (7%)
Strand = Plus / Minus
Query: 6 gaattcctcagaatagc-caatctatcttctgtctatcttatttctaagcatgctttcca 64
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gaattcctcagaaaagcacaatctatcttctgtctatcttatttctaagcatgctttcca 484
Query: 65 aacactttgagtttcaccctttctctaaacccttctcccaaaccatgtggctgcctgcca 124
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 483 aacactttgagtttcaccctttctctaaacccttctcccaaaccatgtagctgcctgcca 424
Query: 125 ccaccaggccaacttccatgcattcttagaccacataaatactccattatcttctgctgg 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 423 ccaccaggccaacttccatgcattcttagaccacataaattctccattatcttctgctgg 364
Query: 185 gcagctgccaagatttacagctagccttcaatgagggttttcttttaaactttcataaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gcagctgccaagatttacagctagccttcaatgagggttttcttttaaactttcataaaa 304
Query: 245 taatcctggaacatcaagatgatgat---------atatgtatatatgcatatatatatt 295
||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 303 taatcctggtacatcaagatgatgatgatgatgatatatgtatatatgcatatatatatt 244
Query: 296 tctactattactatatattttattgtacaaaatatatcagatagatagatagatagatag 355
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 243 tctactattactatatattttattgtacaaaatatatcagacagacagatagatagatag 184
Query: 356 atagatagatagatagatagatagatagatagatagatagatagatagatagattttcat 415
|||||||||||||||||||||| ||||||
Sbjct: 183 atagatagatagatagatagat--------------------------------tttcat 156
Query: 416 aaatatcttcaatggttttatattcctttctctgacacaacccttacaggactccgcata 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aaatatcttcaatggttttatattcctttctctgacacaacccttacaggactccgcata 96
Query: 476 attgacaattatcattctctctc--attgtcccttaaaataatgttcccttccacacgtc 533
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 95 attgacaattatcattctctctctcattgtcccttaaaataatgttcccttccacacgtc 36
Query: 534 tttcctcttttgtctactcataatggccttttctg 568
|||||||||||||||||||||||||| ||||||||
Sbjct: 35 tttcctcttttgtctactcataatggtcttttctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1088
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1078
Effective search space: 720104
Effective search space used: 720104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_a08.g1 MSMg01no334_a08.g1 CHROMAT_FILE:
MSMg01no334_a08.g1 PHD_FILE: MSMg01no334_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:19 2005
(629 letters)
>mm_chr6_61554453_61555482
Length = 1030
Score = 1125 bits (582), Expect = 0.0
Identities = 609/630 (96%), Gaps = 21/630 (3%)
Strand = Plus / Plus
Query: 1 tgaaagaa-tgcacattcgcttagccatttagaaatgtcatgttgtcttcttttgtgctg 59
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaagaaatgcacattcgcttagccatttagaaatgtcatgttgtcttcttttgtgctg 260
Query: 60 aattttgtttttaaggagttgcaatagtttaattattggaacttctgaatatatatatat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattttgtttttaaggagttgcaatagtttaattattggaacttctgaatatatatatat 320
Query: 120 atatatatatatatatatatatatatatatatatatttaaacttaaaggtacgttctctc 179
|||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 atatatatatatatatatat----------------ttaaacttaaaggtacgttctctc 364
Query: 180 ttggtattacacatttaaataaataaatttaaaagaacaaaaattaaaaaaaatgaagtg 239
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 365 ttggtattacacatttaaataaat----ttaaaagaacaaaaattaaaaaaaatgaagtg 420
Query: 240 gagaacagctaatcaaatactcttcgggtatgattaaacaaaataacaggagttctgagt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gagaacagctaatcaaatactcttcgggtatgattaaacaaaataacaggagttctgagt 480
Query: 300 gcttctgggtattcaggaggtcagagatgggattaaaggactaaaactttccaggtatca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcttctgggtattcaggaggtcagagatgggattaaaggactaaaactttccaggtatca 540
Query: 360 agttgctttctatacacttgctgaacatatgaattaaatgtagatgattattttaagaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agttgctttctatacacttgctgaacatatgaattaaatgtagatgattattttaagaaa 600
Query: 420 tgcatcaatctatgtaaaactgaattacaacttctaacatttaacatatatattatgcta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgcatcaatctatgtaaaactgaattacaacttctaacatttaacatatatattatgcta 660
Query: 480 cttcatatatttagtgctatatcacaaacaaactttggtactagaccatcaaaacagtca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cttcatatatttagtgctatatcacaaacaaactttggtactagaccatcaaaacagtca 720
Query: 540 tactacccagatccaaggagtggcatctgttagattcctaattagtagaccctgaacata 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tactacccagatccaaggagtggcatctgttagattcctaattagtagaccctgaacata 780
Query: 600 agatataggtatgagtgattgaaaacttag 629
||||||||||||||||||||||||||||||
Sbjct: 781 agatataggtatgagtgattgaaaacttag 810
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 124 atatatatatatatatatatatatatatatatt 156
|||||||||||||||||||||||||||||||||
Sbjct: 340 atatatatatatatatatatatatatatatatt 308
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 107 aatatatatatatatatatatatatatatatat 139
|||||||||||||||||||||||||||||||||
Sbjct: 341 aatatatatatatatatatatatatatatatat 309
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 122 atatatatatatatatatatatatatatatat 153
||||||||||||||||||||||||||||||||
Sbjct: 340 atatatatatatatatatatatatatatatat 309
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 120 atatatatatatatatatatatatatatatat 151
||||||||||||||||||||||||||||||||
Sbjct: 340 atatatatatatatatatatatatatatatat 309
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 118 atatatatatatatatatatatatatatatat 149
||||||||||||||||||||||||||||||||
Sbjct: 340 atatatatatatatatatatatatatatatat 309
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 116 atatatatatatatatatatatatatatatat 147
||||||||||||||||||||||||||||||||
Sbjct: 340 atatatatatatatatatatatatatatatat 309
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 114 atatatatatatatatatatatatatatatat 145
||||||||||||||||||||||||||||||||
Sbjct: 340 atatatatatatatatatatatatatatatat 309
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 112 atatatatatatatatatatatatatatatat 143
||||||||||||||||||||||||||||||||
Sbjct: 340 atatatatatatatatatatatatatatatat 309
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 110 atatatatatatatatatatatatatatatat 141
||||||||||||||||||||||||||||||||
Sbjct: 340 atatatatatatatatatatatatatatatat 309
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 10
Length of query: 629
Length of database: 1030
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1020
Effective search space: 631380
Effective search space used: 631380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
