BAC Information

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BAC

Clone NameMSMg01-334D15
Chromosome6 (Build37)
Map Location 56,980,467 - 56,981,014
singlet/doubletsinglet
Overlap genenone
Upstream geneGsbs, LOC100041357, Pde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016
Downstream geneV1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334D15.T7 (MSMg01no334_d15.b1)MSMg01-334D15.TJ (MSMg01no334_d15.g1)
ACCAG449775AG449776
length700704
length of high quality
(start - end)
577 (70 - 646)233 (81 - 313)
definitionCHROMAT_FILE: MSMg01no334_d15.b1 PHD_FILE: MSMg01no334_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:35 2005CHROMAT_FILE: MSMg01no334_d15.g1 PHD_FILE: MSMg01no334_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:35 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGGAATACGCGGAATTC
TCCCTCATTACCAAAGAGTAGATGAAAATGCAGCTGTCTGCTGCCTACAA
GAAACACACCTTAGTTTAAAAGACAGGCATCAGCTTTGAATAAAATGATA
GGCAAGAGTACTCCAGTCAAATAGAATCATGAAGACAGCAGGAATTGCTA
TCCAAACTTCTGCCAAAATAGATCACATTCCCAAAGGGATTACAAAAATC
AATACCAGCATCCAGGATTAAGGATGTCCAGAGGCAATGGTTATTGCTAC
ATCTCACTATACATTATTTGGCCTGTATGGAAACAACAGACTGATAACTC
AACTCGGAAGCATTCATACATGGAGAGTGACTGTTGACTGTGAGGAACCA
AGTATGGGGGTTTCTTCAGTTATATTTTTTTTCTACAGGATGTGAATTAT
TTTCTCAAGTTTATTAACATATTTCTTGATACCTATAAGCAGAAAATGAT
ATCACAGAAGCTTTTAAAAATACTTATTTATAAATCCCAACATAAGCCAT
GTGTTTTCATTTGCCAATGCCAGGAGTAAAACTTTGCATTTCTACTTCAA
AGTATTCTAATTTGCTCTATATCACAAATTTGTTTAAAAGGATCATAATC
TCCTGCATTGTCTTCAAGATATCATTCATGTCCACTGTATTGATGGGATT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGCAAAATAACATAACTTTCCCTCCCTAGTGCTGAAATT
ACACCTGTGTGCCACCACGTCCATTTTACAGATGAAACTTTTTGTCTTGA
ATATTTTTGCTCTGAGATTGGTTGAATCCATAGATGTAGAACCCATAAAT
ACAGAGGGTAGGCTGTATCTAGTGTGTCTCACCCTAGAAACATCCTTTAG
AAACAGCACCATGCAGAAATGAGATAGAAAATATGTAAAGACCCATAACT
TATGGGTTATGTGTACCTTCTTTTATTTTTATCTAATTTCTGTTTATTAA
CAGCTCATTTATGATACCCAACATTTAAAAAATGAGGCTCTTGGTTTTAA
AGAACATGAAAGTATAGGATTTTCCAGACAGAGGTTTGGAATTTGCATCA
TGCGATGCCCACAGTTAGACATTAGGGTGAGACACTGTAGTTACACAACA
TGGAGAGCAGAGCGTTTGTTTCCTTGGCTTGAAAACTTCAAGGAATGAGG
AACACCAGCAGAGATGGCATGAGCGGTGCTTAAAGCACTTCCTAAATTTT
ATGTCTGGAATGAATTGTTATTCTATTTCACTCCAGGAAAAAACTTCTCT
GTTTTTGGCGTCCTTAGTCTTTGATGTTGCATTGTTTGTACCTCCATAAC
CTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_d15.b1 MSMg01no334_d15.b1 CHROMAT_FILE:
MSMg01no334_d15.b1 PHD_FILE: MSMg01no334_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:35 2005
         (577 letters)



>mm_chr6_56980067_56981042
          Length = 976

 Score =  758 bits (392), Expect = 0.0
 Identities = 519/570 (91%), Gaps = 26/570 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaaaatgcagctgtctgctgcctacaagaaacacaccttagtttaaaagacaggcatcag 64
           ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 gaaaatgcacctgtctactgcctacaagaaacacaccttagtttaaaagacaggcatcag 889

                                                                       
Query: 65  ctttgaataaaatgataggcaagagtactccagtcaaatagaatcatgaagacagcagga 124
           ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 888 ctttgaataaaatgataggcaagagtactccagtctaatggaatcatgaagacagcagga 829

                                                                       
Query: 125 attgctatccaaacttctgccaaaatagatcacattcccaaaggga-ttacaaaaatcaa 183
           ||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||
Sbjct: 828 attgctatccaaacttcagccaaaatagatcacatttccaaa-ggagttacaaaaatcaa 770

                                                                       
Query: 184 taccagcatccaggattaaggatgtccagaggcaatggttattgctacatctcactatac 243
           || ||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 769 taacagcatccaggattaaggaggtccagaggtaatggttattactacatctcactatac 710

                                                                       
Query: 244 attatttggcctgtatggaaacaacagactgataactcaactcggaagcattcatacatg 303
           |||| |||||||||||| |||||||| || |||||||||||| |||||||||||||||||
Sbjct: 709 attaattggcctgtatgaaaacaacacacggataactcaacttggaagcattcatacatg 650

                                                                       
Query: 304 gagagtgactgttgactgtgaggaaccaagtatgggggtttcttcagttatatttttttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 649 gagagtgactgttgactgtgaggaaccaagtatgggggtttcttcagttatatgttttt- 591

                                                                       
Query: 364 ctacaggatgtgaattattttctcaagtttattaacatattt-cttgatacctataagca 422
           ||||||||||| ||||||||||||||| | |||||||||||| || |||| |||||||||
Sbjct: 590 ctacaggatgtaaattattttctcaagctgattaacatattttct-gatatctataagca 532

                                                                       
Query: 423 gaaaatgatatcacagaagcttttaaaaatacttatttataaatcccaacataag-c-ca 480
           ||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct: 531 gaaaatgatgtcacagaagcttttaaaaatacttgtttataaatcccaacataaggcaca 472

                                                                       
Query: 481 tgtgttttcatttgccaatgccaggagtaaaactttgcatttctacttcaaagtattcta 540
           | | |||||||     ||      || |     ||||||||||||||| ||||||| |||
Sbjct: 471 t-t-ttttcat-----aa------ga-t-----tttgcatttctacttaaaagtatacta 431

                                         
Query: 541 atttgctctatatcacaaatttgtttaaaa 570
           ||||||||||||||| ||||||||||||||
Sbjct: 430 atttgctctatatcaaaaatttgtttaaaa 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 976
Length adjustment: 10
Effective length of query: 567
Effective length of database: 966
Effective search space:   547722
Effective search space used:   547722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)