Query= MSMg01no334_h12.b1 MSMg01no334_h12.b1 CHROMAT_FILE:
MSMg01no334_h12.b1 PHD_FILE: MSMg01no334_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:54 2005
(686 letters)
>mm_chr6_94820117_94821202
Length = 1086
Score = 1292 bits (668), Expect = 0.0
Identities = 677/680 (99%)
Strand = Plus / Minus
Query: 7 gaattccaaacgtgaccgaagtcctgtgtcctaaatgataagctatgaaggaagactgct 66
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 886 gaattccaaacgtgaacgaagtcctgtgtcctgaatgataagctatgaaggaagactgct 827
Query: 67 tgttgctgaggaagcaggagaccagggctcaatacctagcaccgagtgggaggggctgag 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tgttgctgaggaagcaggagaccagggctcaatacctagcaccgagtgggaggggctgag 767
Query: 127 gctggacttccttgcagcaaatgagggaacaatgggcctggcatttggagatggtcaaac 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gctggacttccttgcagcaaatgagggaacaatgggcctggcatttggagatggtcaaac 707
Query: 187 tagcactttgccagagagttacctagaagggccgaaatgtctctgattgctctgtaccaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tagcactttgccagagagttacctagaagggccgaaatgtctctgattgctctgtaccaa 647
Query: 247 cacatgaggagttctgaggtaccgagggggatctgggaagctgggctgcaggcaagcatt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cacatgaggagttctgaggtaccgagggggatctgggaagctgggctgcaggcaagcatt 587
Query: 307 ctcacttagggccttgctgtgctgccttggcctttacagtggaagtttgcttcctttcaa 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctcacttagggccttgctgtgctgccttggcctttacagtggaagtttgcttcctttcaa 527
Query: 367 agcaggcattcattttgttttagtctgtacttattttattactcaaggaaatacatatat 426
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agcagccattcattttgttttagtctgtacttattttattactcaaggaaatacatatat 467
Query: 427 tccacttttacatatttccatttataaataacatattcatgcttattaattttttaaact 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tccacttttacatatttccatttataaataacatattcatgcttattaattttttaaact 407
Query: 487 agggttttcttttatttccctggtattgtttaagagtcctttatatactaaatatattca 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agggttttcttttatttccctggtattgtttaagagtcctttatatactaaatatattca 347
Query: 547 ttttgttgtagatgtttctaatattttaatgttaaacctatatactaatatacattttct 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttttgttgtagatgtttctaatattttaatgttaaacctatatactaatatacattttct 287
Query: 607 ttgttttatatttatcttaatcaccatacaaagcaagatttctttgtgcattattataca 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttgttttatatttatcttaatcaccatacaaagcaagatttctttgtgcattattataca 227
Query: 667 aatctagtgatgattggggc 686
||||||||||||||||||||
Sbjct: 226 aatctagtgatgattggggc 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_h12.g1 MSMg01no334_h12.g1 CHROMAT_FILE:
MSMg01no334_h12.g1 PHD_FILE: MSMg01no334_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:54 2005
(656 letters)
>mm_chr6_94804323_94805382
Length = 1060
Score = 1106 bits (572), Expect = 0.0
Identities = 638/664 (96%), Gaps = 8/664 (1%)
Strand = Plus / Plus
Query: 1 ttcttatacttttcccagcctggatttgtatagaacctagggccacttgatcagaagtgt 60
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ttcttatgtttttcccagcttggatttgtatagaacctagggccacttgatcagaagtgt 256
Query: 61 caccactcataatgggctgggtcttcccacatcaatcatcaatcaagaaaattccctaag 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caccactcacaatgggctgggtcttcccacatcaatcatcaatcaagaaaattccctaag 316
Query: 121 ggtttgttttcaggacaatcctatggaggcattttctcaatgaggcgtc----gttcctc 176
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 317 ggtttgttttcaggacaatcctatggaggcattttctcaatgaggcgtccgtcgttcctc 376
Query: 177 ccaaatggcccgagttgacaaacaggacatattttggctcatcatttcacagggatcagt 236
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 377 ccaaatggcccgagttgacaaacaggatatattttggctcatcatttcacagggatcagt 436
Query: 237 tcacagaatacatggacgttgggaagaatattaaagccacagaacatgtggggaaggagg 296
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 437 tcacagaatacatggactttgggaagaatattaaagccacagaacatgtagggaaggagg 496
Query: 297 ctattcaccttgtcatgttcaggaagcaaagaaatagaaagaggggacagggtaggacag 356
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 497 ctgttcaccttgtcatgttcaggaagcaaagaaatagaacgaggggacagggtaggatag 556
Query: 357 agaatatgccatcaggaacctatttcctccagttagaccctgtcttctaaagtcttcaga 416
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 557 agaatatgccatcaggaacctatttcctccagttagaccctgtctcctaaagtctccaga 616
Query: 417 aacccccaaaacacctccagcagatgggaaccaagtgttcagcactgagcctgtgggaca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aacccccaaaacacctccagcagatgggaaccaagtgttcagcactgagcctgtgggaca 676
Query: 477 tttcatattgaaaccataacaatatacattatttatgtttgaaaatattttaaatggaat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 677 tttcatattgaaaccataacaatatacattatttatgtttgaaaatattttaaatggcat 736
Query: 537 tta----ttttttagtttaccattttatagtaatgtatagcagtgggttaatttttaaag 592
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 737 ttaattattttttagtttaccattttatagtaatgtatagcagtaggttaatttttaaag 796
Query: 593 tttttacatcctgtaagcattttaaattcacttattaataccaggaaaatttacacagat 652
|||||||||||||||||||||||||||||| |||||| || ||| |||||||||||||||
Sbjct: 797 tttttacatcctgtaagcattttaaattcatttattattatcagaaaaatttacacagat 856
Query: 653 tcct 656
||||
Sbjct: 857 tcct 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1060
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1050
Effective search space: 678300
Effective search space used: 678300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
