Query= MSMg01no334_j05.b1 MSMg01no334_j05.b1 CHROMAT_FILE:
MSMg01no334_j05.b1 PHD_FILE: MSMg01no334_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:03 2005
(524 letters)
>mm_chr6_17021462_17022386
Length = 925
Score = 793 bits (410), Expect = 0.0
Identities = 494/522 (94%), Gaps = 1/522 (0%)
Strand = Plus / Plus
Query: 4 gaattcctcaaggattctcacatgggacaaatgagcgcacacgggaagccttactttact 63
|||||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 204 gaattcctcaaggaaactgacatgggataaatgagcgtacacgggaagccttactttact 263
Query: 64 tggtatatggagaaatgagaaacaagagcactcactattttaagcatcgtgtctcaaata 123
|||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 264 tggtatatagagaaatgagaaacaagagcactcactgtgttaagcatcgtgtctcaaata 323
Query: 124 agatttatctctt-aaattttttttttaaatacatttctagggttggtgcagactgtggt 182
|||||| |||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 324 agatttctctcttaaaaatttttttttaaatacatatctagggttggtgtagactgtggt 383
Query: 183 actataggactgaacaattaagacatggattttatactcatgaaagagtaatagagcaag 242
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 actataggactgaacaattaagacacggattttatactcatgaaagagtaatagagcaag 443
Query: 243 aataaataaaattaaatgacagatgacaacaagcagggctagggttacaaactcctgtgc 302
||||||||||| |||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct: 444 aataaataaaactaaatgacagatgataaccagcagggctagggctacaaactcctgtgc 503
Query: 303 agcctttaaaagttagcagtgtcctggatctctaatacagtgggaagttagggtggtaag 362
|||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| ||
Sbjct: 504 agcctttaaaagttagcagtgtccgggatctctaacacagtgggaagtttgggtggtgag 563
Query: 363 tcttgggcatcattactaatcttgccaactttggaattcttgttttctttatcttaacga 422
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 564 tcttggacatcattactaatcttgccaactttggaattcttgttttctttatcttaatga 623
Query: 423 ttggccactgggggagaacttggtaaagccgttttccataccggagtgtggaaatacccg 482
|||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 624 ttggccactgggggagaacttggttaggcagttttccataccggagtgtggaaatacccg 683
Query: 483 tagaagtgaagcagtagtccttacatcctttcacctctgaag 524
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 684 tagaagtgaagcagtagtccttacatcctttcacttctgaag 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 925
Length adjustment: 10
Effective length of query: 514
Effective length of database: 915
Effective search space: 470310
Effective search space used: 470310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_j05.g1 MSMg01no334_j05.g1 CHROMAT_FILE:
MSMg01no334_j05.g1 PHD_FILE: MSMg01no334_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:03 2005
(472 letters)
>mm_chr6_17151396_17152266
Length = 871
Score = 739 bits (382), Expect = 0.0
Identities = 391/394 (99%), Gaps = 1/394 (0%)
Strand = Plus / Minus
Query: 1 tcggttcccctcattggtgctggtaataaagtttgtctgagcaaaaccatctccacctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tcggttcccctcattggtgctggtaataaagtttgtctgagcaaaaccatctccacctgt 334
Query: 61 gaacaacagagaaactgaggtgtgatacgtttcattgtatttacaaacacaagtaaaatg 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 333 gaacaacagagaaactgaggtgtgatacgtttcattgtatttac-aacacaagtaaaatg 275
Query: 121 tacaaatacttaaaatggtccaccttccttatggaggataatttttggactcaaaatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tacaaatacttaaaatggtccaccttccttatggaggataatttttggactcaaaatatt 215
Query: 181 attaacttttgtgtctagggagatgactcagtctctaaagggattggcataagctgtgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 attaacttttgtgtctagggagatgactcagtctctaaagggattggcataagctgtgag 155
Query: 241 ggcctgagttctgtgctgggtgtgtaccacaatacaactggctgtggtggcaagtgtatc 300
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 gtcctgagttcagtgctgggtgtgtaccacaatacaactggctgtggtggcaagtgtatc 95
Query: 301 ctatatattcctatatattctatatatcctatatcatagcactgggttgatgaagccaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctatatattcctatatattctatatatcctatatcatagcactgggttgatgaagccaga 35
Query: 361 agagtcttaggactttgaagccatccaatctagc 394
||||||||||||||||||||||||||||||||||
Sbjct: 34 agagtcttaggactttgaagccatccaatctagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 871
Length adjustment: 10
Effective length of query: 462
Effective length of database: 861
Effective search space: 397782
Effective search space used: 397782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
