BAC Information

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BAC

Clone NameMSMg01-334M07
Chromosome6 (Build37)
Map Location 39,713,862 - 39,714,105
singlet/doubletsinglet
Overlap genenone
Upstream geneHipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2
Downstream geneMrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334M07.T7 (MSMg01no334_m07.b1)MSMg01-334M07.TJ (MSMg01no334_m07.g1)
ACCAG450182AG450183
length759777
length of high quality
(start - end)
244 (81 - 324)210 (56 - 265)
definitionCHROMAT_FILE: MSMg01no334_m07.b1 PHD_FILE: MSMg01no334_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:18 2005CHROMAT_FILE: MSMg01no334_m07.g1 PHD_FILE: MSMg01no334_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGACAAG
NGGAATTCTAGAGTCTGTTTCCTCAGAAGGTGCTTCCCTCTCCTTGCTGC
TCTTGTTTCTGGGCTTTGACCTCCACGTGCGCGGGCACCTATGTGCTACT
GTGCCTCTGACACTCATGTGGACACCTCCCTTTTCTCCTGCTCCCTCCCC
TCTCCTTCTCTACTGGCTAAGTGTCACCAGAGCTGCCTTCTTTATTTACT
GTTACTACAAAAGCCTCACCTGTGTGCCCTGTAAGCTCCTCACCTACTGG
GCTCCACTCCCAAAGACTAGGGATGCCTTTCTTGTGTGATGGGGAACATT
TTTCTCTGACAAAGCTTACCATTCTGCTTAAGGCCACCCCAGATGGAAAC
GCTTATCACTGTAATACCTTGTCCATCTCCGGTCTCTCACTTAATAACTG
ACTGGGTCTCTCCCTTTTCTCCTGCTCTCCCCGAGCTAGCTCTCATCAGC
TTCGAGGAACTACAACCCGTCTGTAGTCCTACTATGTTCTGGCTCCATTT
TGCAGCTTCTTTGACCTCTCAGCTCCCTCTATGAGTTCATATGAACAGTC
CTTTCTCTCTCCTAACCAATGTTTCCAATTGCAAACCTTCAAATTTCTTT
CTCGTACGACCCCACATCTCATATCTGATATCATTATTTTGAGTCATCCT
GCACAAAATTTTGTTTCTCCCTGCATTCCCACATTCCTGTTTATATCGCC
TCCACCTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCA
AAAAAATTGTAGATGATTGTGTGAGTTATGATGTGGTTGTTGGGATTTGA
TCTCACCGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATC
TCTCCAGCCCAGGATCTTACTTTTAACTCACAGAGATCCATCTGCCTCTG
CCTTAGAGCACTGGAATTAAAGATGTATTCTACTACTCCCGGGTAGAGAT
CTGTTTTCTTTGAAAAAGAAGCAGTATTTAGGGGCATTCCTGATTGGCTT
TTTGAATTATTCTACTAAAGCTGTAACCCGAGCCAGTTTGAACGTGCCTC
CTGTTTACACCATGTGATGCAGCCTGTGTGGGGCTCACCTGTTATGTGGC
TTGCGCACACTGTGTCCCCGGAGATTGTACGCACTTTGCTTGGACGCCAC
ATTGTATTTGTTCAATATCTCCTTTCACCTTTTACTTATATAGTTCTTCC
CCTCCTCACTACTTTCGTCTTTCCTGCTTGTTTTCTTTCGCCACCTACTT
TCTATCTTGTCCATTCTACTCGTCCTCCTGTACTCCTCCTATCTCACACC
CCCTTCCCTCACTTTATATAGTCTCACCTCCTTTCCCTTCTTTTCCTTAC
TATTAATCCATTTACGTATTCCTATTCAATACTATACTTTCCCTTTCCTC
CCCTCTGTTTTTTTCCCCTTTCTCCTCTACTTTTATTCTTTTCCTCTTTA
ATCTTTTAACTCCTTTCACTTCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_m07.b1 MSMg01no334_m07.b1 CHROMAT_FILE:
MSMg01no334_m07.b1 PHD_FILE: MSMg01no334_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:18 2005
         (244 letters)



>mm_chr6_39713662_39714305
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcttccctctccttgctgctcttgtttctgggctttgacctccacgtgcgcgggcacct 60
           |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 444 tgcttccctctccttgctgctcttgtctctgggctttgacctccacgtgggcgggcacct 385

                                                                       
Query: 61  atgtgctactgtgcctctgacactcatgtggacacctcccttttctcctgctccctcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgtgctactgtgcctctgacactcatgtggacacctcccttttctcctgctccctcccc 325

                                                                       
Query: 121 tctccttctctactggctaagtgtcaccagagctgccttctttatttactgttactacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctccttctctactggctaagtgtcaccagagctgccttctttatttactgttactacaa 265

                                                                       
Query: 181 aagcctcacctgtgtgccctgtaagctcctcacctactgggctccactcccaaagactag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagcctcacctgtgtgccctgtaagctcctcacctactgggctccactcccaaagactag 205

               
Query: 241 ggat 244
           ||||
Sbjct: 204 ggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)