BAC Information

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BAC

Clone NameMSMg01-335G02
Chromosome6 (Build37)
Map Location 22,640,172 - 22,640,328
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnd2, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959
Downstream geneLOC668018, LOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2, Rnf133, Rnf148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335G02.T7 (MSMg01no335_g02.b1)MSMg01-335G02.TJ (MSMg01no335_g02.g1)
ACCAG450649AG450650
length738812
length of high quality
(start - end)
509 (52 - 560)167 (77 - 243)
definitionCHROMAT_FILE: MSMg01no335_g02.b1 PHD_FILE: MSMg01no335_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:07 2005CHROMAT_FILE: MSMg01no335_g02.g1 PHD_FILE: MSMg01no335_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAGGCCTATACCTAGACATGATAAAAGCAATCTACAGCA
AACCAGTAGCCAGCATCAAAGTAAATGGTGAGAAGCTTGAAGCAATCCCA
TTAAAATCAGGGACTAGACAAGGCTGTCCACTCTCTCCCTACCTATTCAA
CATTGTACTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATCA
AGGGGATACAAATTGGAAAGGAAGAAGTCAAATTATCACTTTTTGCAGAT
GATATGATAGTATATATACGTGACCCTAAAAATTCCACCAGAGAACTCCT
AAGCCTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAA
ACAAGTCAATGGCCTTTCTCTACACAAAGGCCAAATAGGCTGAGAAAGAA
ATTAGGGAAACAACACCCTTCTCAATAGCCACAAATAATATAAAATACCT
AGGCATGACTCTAACTAAGGAAGTGAAAGATCTGTACGATAAGAACTTCA
AGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTC
CCATGCTTATGGATCGGCAGGATCAATATAGTAAAAATGGCTATCTTGCC
TAAAGCAATCTAAAGATTCTATGCTATCCTCTTCAAAATTCCAACTCAAT
TCCTTCAACGAATTACAAAGGCCTATTGGCCATATCCN
NGATTGTATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTCGCACTATTGAATTCAAGGT
AGACGTGGGATATCCAGCAGATTTCAAGCAGACAGTGGTAAACACGAGTA
GATGGTCAGGAAGAAACACAGTAGAAGTGCTCACTTGAAACCTCAGATAG
GCACACACAGGTCACACTGCAGATGGAAAGAAAACCTCCTCAGAAAAGTA
CTCACTGCAGGAAAGAATTAAGACAGGTTTACCTGATGGATGATGAGTTT
GGTATCACGGTGGAGCACTTACATTATAGTGTGCTATCTATTTTTAACCC
CACCTCCACTTACACTCTCTTAGCGTTGTACATTTATTAAGCAGCATAAT
GAGTTAGGTATATAAAATATTGACCTCCATATAACCCCCATGGCGCTTCT
ACATCAAATCATGAACAAAACTAGAACGTCCGTTTCATTCATTCTGGTTT
CCAAAACTACTTATTTTTCTTTGTTTAAACGTCACCAATCATATATCAGA
ACTTGTCTTGTGCTGTTTTCTTTGCTTCCCCATATGGTCTCTGTTTTCCG
TTGTCACATTGTTTCATTCATTGTTGTCCCCGTCACCTCTATATCTTTTT
ACTTGTCTTCTTAAACGAATTTGCGTCGCATTTCATAATCGCTTATTGTG
TATTGCATCCTTTCCCTTTTCTGTTCTCTTTTTTCATCCCCTCTTTATCA
TTTTTTTTCCCCCACTCTTCCGTTTCTCTTCCCTTCCTCATCACTCTTGC
CCGTCTTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_g02.g1 MSMg01no335_g02.g1 CHROMAT_FILE:
MSMg01no335_g02.g1 PHD_FILE: MSMg01no335_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:07 2005
         (167 letters)



>mm_chr6_22639972_22640538
          Length = 567

 Score =  273 bits (141), Expect = 5e-78
 Identities = 156/167 (93%), Gaps = 10/167 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcgcactattgaattcaaggtagacgtgggatatccagcagatttcaagcagacagt 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcggactattgaattcaaggtagacgtgggatatccagcagatttcaagcagacagt 260

                                                                       
Query: 61  ggtaaacacgagtagatggtcaggaagaaacacagtagaagtgctcacttgaaacctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 261 ggtaaacacgagtagatggtcaggaagaaacacagtagaagtgctcacttgaaacc---- 316

                                                          
Query: 121 ataggcacacacaggtcacactgcagatggaaagaaaacctcctcag 167
                 |||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ------acacacaggtcacactgcagatggaaagaaaacctcctcag 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)