Query= MSMg01no335_k20.b1 MSMg01no335_k20.b1 CHROMAT_FILE:
MSMg01no335_k20.b1 PHD_FILE: MSMg01no335_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:31 2005
(638 letters)
>mm_chr6_16980946_16981988
Length = 1043
Score = 1189 bits (615), Expect = 0.0
Identities = 634/643 (98%), Gaps = 5/643 (0%)
Strand = Plus / Plus
Query: 1 gggaactagatccacaatcaggaatgggcaagcagggaaggaaacaggctgataatggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggaactagatccacaatcaggaatgggcaagcagggaaggaaacaggctgataatggac 260
Query: 61 agttcttcatttgacctgtgagaggcagattctctgaagattgcaagaatcttaaaaaga 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 agttcttcatttgacctgtgagaggcagattctctgaagattgtaagaatcttaaaaaga 320
Query: 121 taaatcctttataactttcatttacctacctcagaacaatttcctagacctttaaacagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatcctttataactttcatttacctacctcagaacaatttcctagacctttaaacagt 380
Query: 181 ttattagaaccttggtttttttttttttt-----agaagctttcatatcctaaggtttta 235
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ttattagaaccttggtttttttttttttttttttagaagctttcatatcctaaggtttta 440
Query: 236 cataaacgttttctatccaattatttaccatgagtcacaggtagttgatactggattcaa 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataaacgttttctatccaattatttaccatgagtcacaggtagttgatactggattcaa 500
Query: 296 acctttcagagacctgaaaaggatatatctaaatggtctatgtatcaattaaaatgacag 355
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acctttcggagacctgaaaaggatatatctaaatggtctatgtatcaattaaaatgacag 560
Query: 356 acttacccattaccccaacagtcaccccactaggttcatgatggcttccatggggacaca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttacccattaccccaacagtcaccccactaggttcatgatggcttccatggggacaca 620
Query: 416 ggtccagggcaggatcagtgttcagctgccaggcccaacaaatcagagaagccttcctgt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtccagggcaggatcagtgttcagctgccaggcccaacaaatcagagaagccttcctgt 680
Query: 476 ggagaggaacttgagagactgaccttgctttgacctaagcaactccaggcatatcccatg 535
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 ggagaggaacttgagagactgaccttgctttgacctaagcaactctaggcatatcccatg 740
Query: 536 tctctgtttgtccacagttcagacagggccacagcagcaagcaaggcaagggagcagact 595
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctttgtttgtccacagttcagacagggccacagcagcaagcaaggcaagggagcagact 800
Query: 596 ttctcagtggttatcctaccgcaatccaggtggggctctttct 638
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttctcagtggttatcctaccgcaatccaggtggggctctttct 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1043
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1033
Effective search space: 648724
Effective search space used: 648724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_k20.g1 MSMg01no335_k20.g1 CHROMAT_FILE:
MSMg01no335_k20.g1 PHD_FILE: MSMg01no335_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:31 2005
(532 letters)
>mm_chr6_17155778_17156709
Length = 932
Score = 998 bits (516), Expect = 0.0
Identities = 528/532 (99%)
Strand = Plus / Minus
Query: 1 agtcagatctgttctgccgtgaaaaatttggggagcatttttaaattattttcttcagat 60
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 agtcagatatgttctgctgtgaaaaatttggggagcatttttaaattattttcttcagat 673
Query: 61 tgtactactttaaacatttataatatgtctctctgttccacttgattttataggaacaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tgtactactttaaacatttataatatgtctctctgttccacttgattttataggaacaat 613
Query: 121 cattaccaaaggaatacaggtgattattagtgggttagttatcttttcaatttctagtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cattaccaaaggaatacaggtgattattagtgggttagttatcttttcaatttctagtgt 553
Query: 181 tagaaactttatcagtgtatttttggcatgtgcaatatagaaaagaaactgtgagcttga 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tagaaactttatcagcgtatttttggcatgtgcaatatagaaaagaaactgtgagcttga 493
Query: 241 aacaaaactgttcccttgagaaagaaataattgacagtgtggcttttaattttcagtaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aacaaaactgttcccttgagaaagaaataattgacagtgtggcttttaattttcagtaca 433
Query: 301 tttagctttctaagatattgttcttctttgcttcccaattaataacagaaatttccaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tttagctttctaagatattgttcttctttgcttcccaattaataacagaaatttccaaat 373
Query: 361 gccaccagtgattctgtacagccatgacctagatataagaggaaatggggtttcctactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gccaccagtgattctgtacagccatgacctagatataagaggaaatggggtttcctactc 313
Query: 421 tgtagtcaagggtgctctttgatgtgcttcccctctgtggtactcccctgcaggtcggtc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 312 tgtagtcaagggtgctctttgatgtgcttcccctctgtggtactcccctgcaggtcagtc 253
Query: 481 ccttgcagtgatcctcttcagaacatggctcctgaaggcttggttcttggtt 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ccttgcagtgatcctcttcagaacatggctcctgaaggcttggttcttggtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
