BAC Information

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BAC

Clone NameMSMg01-335N21
Chromosome6 (Build37)
Map Location 13,505,459 - 13,505,984
singlet/doubletsinglet
Overlap genenone
Upstream geneThsd7a, LOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478
Downstream geneTmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335N21.T7 (MSMg01no335_n21.b1)MSMg01-335N21.TJ (MSMg01no335_n21.g1)
ACCAG451022AG451023
length725747
length of high quality
(start - end)		528 (33 - 560)460 (76 - 535)
definitionCHROMAT_FILE: MSMg01no335_n21.b1 PHD_FILE: MSMg01no335_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:46 2005CHROMAT_FILE: MSMg01no335_n21.g1 PHD_FILE: MSMg01no335_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATCAAAT
GTACACAGGGTGACAACAAAAATTAATTTTCAAAAACAAAAGTTAAGGGC
TTAATATAATTTCTATATCCCTTTCATGGATTTTTTAACGTAAAAACTTT
GTCTTAAAATGTTAAGAACACAAGTTCTAAGTAAAAGTTCTGTTGATAGC
CTGTTCTCTAACATTTTCTAGCATAGATAAGTAAATATAAAAGATTTGTA
GGTGATGATATCCAGGTAATGTGGAAAAATGGGTTGGGTTATAAACTGCT
TTTCCTTATCAACAGCATCTCGTAGAAATTGGATTACAAATCATAGCAGA
AAAGATAAAAAGGCCTGGGTGGATGACCTGGTAGCATTAACCTTTTAGCC
GCATTTTAGGAAAATCAGAAATAAGATCTTATGCCAGTTTTTTTTTTTTC
CCCAAAGAAAAAGTGTCCCAGCTCTTTATTCCTGGCAGAGTCACTCTTCG
TCTTGCCTCACTTGAAAGAAGTCTCATGCCCTCTGATCCATATCCACTGG
CCTTGACTCAGNCCTGACCAAGCCCCTTTGGTTGCTGTTGTCACTGCGCC
TATTCTGTCACTATGAGCAAGTTTCTGCTCCTGCTGAAAGATCTGACTCA
CATGTAGCAATTTGCCTTTCTATGTCATTGAAATTTTCCGAAACCAAAAT
TTCTTTTTCCGAGATATAAAGGAAN

CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAGAGATAGCCTCTCTGGC
CATCTATCCCTTGCTTCAGGGAAGATGAGCGGGGATGAGAGCCCTGGGAT
GTATGCTTGTTATAGTGTGTGTGTTTTTTGTGTTTGGCACATGTGTTAGG
TGCAGAGTGTGCGGCCCGCACTTTCGCCATGGTAGCGTAGGCTTTTGCTG
CAGTGGAGGCGGGACAATCTCCTCAGATTCGGTTTGCCGCTCTAAAAGAA
ATTATGCTGCGTTATGCCGTGGGGTGCGAGGCTAAGCACTGCACAGAGGA
TAGCTTGCTGTTGGCATCCTGTGGAAGGTATGTCTGATTGCATGAAGGTT
CAGTGTCCTAGTTCCCTTCCCTCAGGAAAAACGACACGGGAGCTGGCCAA
GACCTCTCTGGGTGATGAGCCTAAGGGATGGTTTTGTGTAGGGCCCCTAT
GCTTGCACACTGGGGATCAGACCTCTACCTTCTCCCATTGAGGCTTGCTT
GCCCCTATTAAGATCTGGCCTTAGGTTAATTAACATCCTGGGCTTTTGAA
GCTCCTGCCGCAAGTCAAATACTTTTTCCCCCTTTGTTGTTTGCCCTGCC
ACATTTGTTTTCCCCCGTTTCCATTTCCCTTCCCATTTTTCCCCCCCCTT
TTTTGTCCTTTTTTTCCTTTTTTTTTTTCTCCCCTTCATTTTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_n21.b1 MSMg01no335_n21.b1 CHROMAT_FILE:
MSMg01no335_n21.b1 PHD_FILE: MSMg01no335_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:46 2005
         (528 letters)



>mm_chr6_13505255_13506184
          Length = 930

 Score =  955 bits (494), Expect = 0.0
 Identities = 518/526 (98%), Gaps = 2/526 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatcaaatgtacacagggtgacaacaaaaattaattttcaaaaacaaaagttaa 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaattctatcaaatgaagacagggtgacaacaaaaattaattttcaaaaacaaaagttaa 671

                                                                       
Query: 65  gggcttaatataatttctatatccctttcatggattttttaacgtaaaaactttgtctta 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 670 gggcttaatataatttctatatccctttcatggattttttaaagtaaaaactttgtctta 611

                                                                       
Query: 125 aaatgttaagaacacaagttctaagtaaaagttctgttgatagcctgttctctaacattt 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 610 aaatgttaagaacacaagttctaagtaaaagttctgttgataggctgttctctaacattt 551

                                                                       
Query: 185 tctagcatagataagtaaatataaaagatttgtaggtgatgatatccaggtaatgtggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 550 tctagcatagataagtaaatataaaagatttgtaggtgatgatatccagataatgtggaa 491

                                                                       
Query: 245 aaatgggttgggttataaactgcttttccttatcaacagcatctcgtagaaattggatta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaatgggttgggttataaactgcttttccttatcaacagcatctcgtagaaattggatta 431

                                                                       
Query: 305 caaatcatagcagaaaagataaaaaggcctgggtggatgacctggtagcattaacctttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 caaatcatagcagaaaagataaaaaggcctgggtggatgacctggtagcattaacctttt 371

                                                                       
Query: 365 agccgcattttaggaaaatcagaaataagatcttatgccagtttt-ttttttttcccc-a 422
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 370 agccgcattttaggaaaatcagaaataagatcttatgccagttttgttttttttccccca 311

                                                                       
Query: 423 aagaaaaagtgtcccagctctttattcctggcagagtcactcttcgtcttgcctcacttg 482
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaggaaaagtgtcccagctctttattcctggcagagtcactcttcgtcttgcctcacttg 251

                                                         
Query: 483 aaagaagtctcatgccctctgatccatatccactggccttgactca 528
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaagaagtctcatgccctctgatccatatccactggccttgactca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 930
Length adjustment: 10
Effective length of query: 518
Effective length of database: 920
Effective search space:   476560
Effective search space used:   476560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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