Query= MSMg01no336_d11.b1 MSMg01no336_d11.b1 CHROMAT_FILE:
MSMg01no336_d11.b1 PHD_FILE: MSMg01no336_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:13 2005
(533 letters)
>mm_chr6_50210770_50211701
Length = 932
Score = 961 bits (497), Expect = 0.0
Identities = 521/529 (98%), Gaps = 1/529 (0%)
Strand = Plus / Plus
Query: 5 gaattcattgttatcgcatatctagattctgttcctccaacagctcagatcttttccttc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgttattgcatatctagattctgttcctccaacagctcagatcttttccttc 264
Query: 65 cactctcaactctgcctaggggttgactgtcacctgggcccagctgtcctggagcatcct 124
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cactcccaactctgcctacgggttgactgtcacctgggcccagctgtcctggagcatcct 324
Query: 125 ccctgactcctctctccaagtcccattcagactcccagtgagtggctggctgttttgttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccctgactcctctctccaagtcccattcagactcccagtgagtggctggctgttttgttc 384
Query: 185 aggcttcagcaaagcctggaagctgcctggtgtctttccctgaggggtgcaaatgggaag 244
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 aggcttcagcaaagcctggaagctgcctggtgtctttccctgaggggtgcaagtgggaag 444
Query: 245 aacccctccccaaacggccactccaggtaaaaggcctcacagtgaagaggttcagtcagt 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 aacccctccccaaacggccactccaggcaaaaggcctcacagtgaagaggttcagtcagt 504
Query: 305 taccccaggtcaggcaggacccatgccagcctgtgatcttcctgcacatgcactcatgca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taccccaggtcaggcaggacccatgccagcctgtgatcttcctgcacatgcactcatgca 564
Query: 365 cacactggatccttctgacaccgacacaggagagagattagaagacaaaggatggatgca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cacactggatccttctgacaccgacacaggagagagattagaagacaaaggatggatgca 624
Query: 425 tgggatatggtgaaggcatggtgagataggggtgccagagaacaccagcggcacttgcca 484
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 625 tgggatatggtgaaggcatggtgagat-ggggtgccagagaacaccagctgcacttgcca 683
Query: 485 catcccaggaccacaggagtggtggtgatcatggtgggaggggcaagga 533
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 684 catcccaggaccacaggagtggtggtgatcatggtggaaggggcaagga 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 932
Length adjustment: 10
Effective length of query: 523
Effective length of database: 922
Effective search space: 482206
Effective search space used: 482206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_d11.g1 MSMg01no336_d11.g1 CHROMAT_FILE:
MSMg01no336_d11.g1 PHD_FILE: MSMg01no336_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:13 2005
(496 letters)
>mm_chr6_50395298_50396193
Length = 896
Score = 959 bits (496), Expect = 0.0
Identities = 496/496 (100%)
Strand = Plus / Minus
Query: 1 attagttaccatggtgatatgtggctcaaagggaaagagtctggattttaattgggaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 attagttaccatggtgatatgtggctcaaagggaaagagtctggattttaattgggaccc 582
Query: 61 tggggagcaaagttctattttcctgtgggtcacaattcaggctgcaaagatctgaatgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tggggagcaaagttctattttcctgtgggtcacaattcaggctgcaaagatctgaatgag 522
Query: 121 gaaaagaagagagactgactgggatcctcccaggagaaggagacgtgccaagtcctgtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaaaagaagagagactgactgggatcctcccaggagaaggagacgtgccaagtcctgtcc 462
Query: 181 ttttgtacctttcaggttgtaggaggccacgtggacttggggagaagggtttgaatttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttttgtacctttcaggttgtaggaggccacgtggacttggggagaagggtttgaatttct 402
Query: 241 ttgatgctacacacagatttgtttatttactaattgggattgagtccaaagttgagtttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttgatgctacacacagatttgtttatttactaattgggattgagtccaaagttgagtttc 342
Query: 301 tgttacttctgtaactgaagctgaacaaggtctaacaaccagagttgactggtgtggctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgttacttctgtaactgaagctgaacaaggtctaacaaccagagttgactggtgtggctc 282
Query: 361 tcaaaggagcttaagttgctggctctctttcaagtgtagctcatttgtcagggaccagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tcaaaggagcttaagttgctggctctctttcaagtgtagctcatttgtcagggaccagga 222
Query: 421 tgagttaggggtatggatttgttttcttatggcggtgacaaaatgcctggccagaagcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tgagttaggggtatggatttgttttcttatggcggtgacaaaatgcctggccagaagcaa 162
Query: 481 gctaaagtaggagagg 496
||||||||||||||||
Sbjct: 161 gctaaagtaggagagg 146
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
