BAC Information

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BAC

Clone NameMSMg01-336H01
Chromosome6 (Build37)
Map Location 55,010,964 - 55,191,778
singlet/doubletdoublet
Overlap geneGars, Crhr2, Inmt, C330043M08Rik
Upstream geneLOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik
Downstream geneAqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336H01.T7 (MSMg01no336_h01.b1)MSMg01-336H01.TJ (MSMg01no336_h01.g1)
ACCAG451458AG451459
length747745
length of high quality
(start - end)
427 (72 - 498)428 (72 - 499)
definitionCHROMAT_FILE: MSMg01no336_h01.b1 PHD_FILE: MSMg01no336_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:30 2005CHROMAT_FILE: MSMg01no336_h01.g1 PHD_FILE: MSMg01no336_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,191,355 - 55,191,778)(55,010,964 - 55,011,346)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAGCCGCGGA
ATTCTCCTTTGCCACACAGACCCGACTTAGAACCAGCTCACTCTGGGCTA
AAATTAGATGTGTCCCCGAGCCAGCTAAGCTGCCTCCTGTGCCTCTCCTG
GCAGCCAATTTCACTAGAAATGAGGTGTGACTACCCCTGAGTCCAAACTG
GGGATCCCTTCCCTCTCTGCCCCCCCTGTGTCTAAGGCAGGTCCCCACTT
ACTGAACACAGGCAGCTTGCATGTGGGAAGCCTGGCAGATCGGGGACTTA
CTGAGAAACTGATATTTGTTAGAGAAACGAGCTCTTCAAGGTTGGTCTGA
TAAGTGGCGGTTCAGAACTAAAACTCTCTCTGGGTCCCAAAGCTGGAGAG
CACACAACTGCCTCAAGAAGTCAGTACATGGGGATTTCAGATTTTCACAT
TTCCTGTCTGGATCCCTTAGTGGAAACAGACTTCATGGGAGTTTGCAAGG
AAGCGTGGGTGGGTGTATGGCGTTGGAGGTGTTTCTCCTCTTTTTATTTT
TTCTCTCCTCCCACCCTATCTATAACTCACTCTTTTTATATTTCACCACT
TTTTTTTTTTCTATTTCTCCCCCTCCTCCTCCCTCCTTTATCTAGTTTTC
CTCTTGTTACACCCCCTAACTCACCTTAATCTTCTCCCCTACACACAATT
TTATACTCTAATATAACTACTTCCCTTTATATTTTTCCCCCTACTCG
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAACCAAGGGAAATTGCCTTTTGCTGCTGC
CCAGATTGGAAACTCCTTCAGAAATGAGATCTCACCTCGGTCTGGACTGA
TCCGAGTCAGGTACTCACTGCTGGTGTCGGGATGGAGATGGAAACCGCCA
CACTTGTACTTTAACCTTGACCACAGTTTGTTTCTGTTGTAACCTCTGGT
GAAGGTGGCAGTTTTGTTTGAGGAAAGGAAAGAGCAAAGATGAGAGCTTC
TGGTTCCTACTTGGTCTGAAATCTTTTCTTTGCTCACCACCTCTTGAGGA
TGTAGAGATCCTGATGATAATCATTATGTTAAAACCAGTGCATTTCTGTC
AGTGCTGTGGAGTACAGGGTTGGTCTGTGTCTGTGTCTGTCTGTCTGTCT
GTCTGCCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGCGT
GCGTGTGCGTGTGTCCCTTGTCCTCGTAAGGTGGTTTTGCTGTTTGCTTG
GAAGGTGTGTCCTGGATTCACCTTCCTTGTTTTTGTCCGCCGCCCCGTTG
TTACCCCTGTTAAGGTCGTATTATATTGCCGCGTGCATGTTTTACACCCG
CTTGATATATTAATTTCCCTCTAACTTTATCTTCCTGGCTCCTCGCCGTA
TTTATTCTTACCCCCTGCCTTTTTTTTTTTTTCCCCGCCTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_h01.b1 MSMg01no336_h01.b1 CHROMAT_FILE:
MSMg01no336_h01.b1 PHD_FILE: MSMg01no336_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:30 2005
         (427 letters)



>mm_chr6_55191155_55191981
          Length = 827

 Score =  781 bits (404), Expect = 0.0
 Identities = 419/424 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgacttagaaccagctcactctgggctaaaattagatgtgtccccgagccagctaagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccgacttagaaccagctcactctgggctaaaattagatgtgtccccgagccagctaagct 565

                                                                       
Query: 61  gcctcctgtgcctctcctggcagccaatttcactagaaatgaggtgtgactacccctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcctcctgtgcctctcctggcagccaatttcactagaaatgaggtgtgactacccctgag 505

                                                                       
Query: 121 tccaaactggggatcccttccctctctgccccccctgtgtctaaggcaggtccccactta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccaaactggggatcccttccctctctgccccccctgtgtctaaggcaggtccccactta 445

                                                                       
Query: 181 ctgaacacaggcagcttgcatgtgggaagcctggcagatcggggacttactgagaaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgaacacaggcagcttgcatgtgggaagcctggcagatcggggacttactgagaaactg 385

                                                                       
Query: 241 atatttgttagagaaacgagctcttcaaggttggtctgataagtggcggttcagaactaa 300
           | |  ||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agacatggcagagaaacgagctcttcaaggttggtctgataagtggcggttcagaactaa 325

                                                                       
Query: 301 aactctctctgggtcccaaagctggagagcacacaactgcctcaagaagtcagtacatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aactctctctgggtcccaaagctggagagcacacaactgcctcaagaagtcagtacatgg 265

                                                                       
Query: 361 ggatttcagattttcacatttcctgtctggatcccttagtggaaacagacttcatgggag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggatttcagattttcacatttcctgtctggatcccttagtggaaacagacttcatgggag 205

               
Query: 421 tttg 424
           ||||
Sbjct: 204 tttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no336_h01.g1 MSMg01no336_h01.g1 CHROMAT_FILE:
MSMg01no336_h01.g1 PHD_FILE: MSMg01no336_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:30 2005
         (428 letters)



>mm_chr6_55010764_55011591
          Length = 828

 Score =  710 bits (367), Expect = 0.0
 Identities = 379/383 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccaagggaaattgccttttgctgctgcccagattggaaactccttcagaaatgagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccaagggaaattgccttttgctgctgcccagattggaaactccttcagaaatgagatc 260

                                                                       
Query: 61  tcacctcggtctggactgatccgagtcaggtactcactgctggtgtcgggatggagatgg 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tcacctcggtctggactgatccgagtcaggtactcactgttggtgtcgggatggagatgg 320

                                                                       
Query: 121 aaaccgccacacttgtactttaaccttgaccacagtttgtttctgttgtaacctctggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaccgccacacttgtactttaaccttgaccacagtttgtttctgttgtaacctctggtg 380

                                                                       
Query: 181 aaggtggcagttttgtttgaggaaaggaaagagcaaagatgagagcttctggttcctact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggtggcagttttgtttgaggaaaggaaagagcaaagatgagagcttctggttcctact 440

                                                                       
Query: 241 tggtctgaaatcttttctttgctcaccacctcttgaggatgtagagatcctgatgataat 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggctgaaatcttttctttgctcaccacctcttgaggatgtagagatcctgatgataat 500

                                                                       
Query: 301 cattatgttaaaaccagtgcatttctgtcagtgctgtggagtacagggttggtctgtgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 501 cattatgttaaaaccagtgcatttctgtcagtgctgtggagtacaggggcggtctgtgtc 560

                                  
Query: 361 tgtgtctgtctgtctgtctgtct 383
           |||||||||||||||||||||||
Sbjct: 561 tgtgtctgtctgtctgtctgtct 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)