TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAGTCTGTGCACACACAGTTCACTGTCTCTTTATGTTGATAGAAT
CTGTTAGAATGAATAAATGTTTTTACTCAGAAATACATAAAGAAAATATT
ATAAAAGATAGATGGAAAGATTGTATTTATGTGTGAATGTATTCATACAT
AGGAATATACCAACATTCAATTGTGGAATACCTTTTTTTAAAACATCTGT
TTGTTGCTTTTTATAATCGGTCTTATAGTGTTGGCATCCTTACATATTAA
AGACAGCTCTCACTCATTTGGTAAAATATATTTCTCATATACACACAAAA
CACACATATGAAAAAGCCCCTGTGGCTGTATTAAAAGATGAAAGCTTTTC
TGTACTGTATAAGCCTAAGGAATAGGGAAGATTTTCTTAAACAGCACATA
TGTAAAAGCCTAAATTTCCCTGGAAGGAAAAACTCAGATATTAATATGTA
AACCATTTCTCTGTGTATGCATGTCTGTGCAAATATGTGGGCCATGGGAC
AACATTGAAACATTGGGAATAATTTCTCAGAAACTATCACTTCTCGTGCT
CTCTCTCTTTCTCTATCTTTGAGACAGGATGTTTCATTCTCATTGATCTA
GAACTTGCCAAGTGGGTCAGCTGACCAGTGAGGCTTCTCGGTACTCTGCC
TCCTCAGCTCTGGGA

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCCAGCGGAATTCTAGTGACAAGGTCAGGGCAGTTTGTG
GTTTTTCTCAGAATTCACTGTGGGGTGGGGTGGGGTAGGGGAATTTTTCT
GCNNCCCCCTCCTCTTGCTCTGGTCTTTCTCTCACCCCACTCCCCCCTTT
TCTTCCCTTCCGCTCACCTATTTCTCCTACCCCTCTGCCCCTCTTTTTTT
CTTCCCCCCCCCCCCCCCCTCCCCCTTTCCTTCCCCTCCTTCCCTCCTCC
CCCCCTCCCTTTACTACTTTTTTCCCCCCCGTTCCCCTTTCTCTTACTTC
TCCCTCTTCTTCTCCCCCCCCCCTCTCTCCCCTCCCCCCTCCCCTTTTTC
CCCTTCCCCCTTTCCTCCCCCCCCTTCTTCCCCCCCCTCTCTCCTCCCCC
CTTACCCCTTTCCCCTTCTCCCCCCTCTCTTTTCCTCCCCTCTTTTCCCT
CCCCCCCCCCTCTCCTCCTCTTTTCCCCCCCTATATTCTTCCCTCCCCCC
CCTTCACTTTCCTCTTTTCCCCCTCTTCTCCCCTCCCTCCCCCTTTTTTT
TCCCCCCCTCTCTCTCCCCCTCCCCTCCTCCCTTCTTCCCCCTCCTTTTC
TCCCTATTTCCCTTTTCCCCTTCCCTCCCTCTTTTTTTTCTCCCTATTTT
ACCTCCCTTTCCCCCCCTTTTTCTTCTCCTTCCTCCTCTTTTCTCCCCCC
CCCTCCCCTCCTCTCCTCTTCTTCTTCCCCCTCCCCTCTCCCCCTCCTCC
TTTTCCTCCTCCCCTCCCTN

Query= MSMg01no336_i08.b1 MSMg01no336_i08.b1 CHROMAT_FILE:
MSMg01no336_i08.b1 PHD_FILE: MSMg01no336_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:36 2005
         (610 letters)



>mm_chr6_46756357_46757365
          Length = 1009

 Score = 1094 bits (566), Expect = 0.0
 Identities = 596/606 (98%), Gaps = 1/606 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaagtctgtgcacacacagttcactgtctctttatgttgatagaatctgttaga 64
           |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattcaaagtctgtg-acacacagttcactgtctccttatgttgatagaatctgttaga 263

                                                                       
Query: 65  atgaataaatgtttttactcagaaatacataaagaaaatattataaaagatagatggaaa 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 264 atgaataaatgtttttactcagaaatacgtaaagaaaatattataaaagatagatggaaa 323

                                                                       
Query: 125 gattgtatttatgtgtgaatgtattcatacataggaatataccaacattcaattgtggaa 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 324 gattgtatttatgtgtgaatgtattgatacataggaatataccaacattcaattgtggaa 383

                                                                       
Query: 185 tacctttttttaaaacatctgtttgttgctttttataatcggtcttatagtgttggcatc 244
           |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 tacctttttttaaaacatctatttgttgctttttataatctgtcttatagtgttggcatc 443

                                                                       
Query: 245 cttacatattaaagacagctctcactcatttggtaaaatatatttctcatatacacacaa 304
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 cttacatattaaagacagctctcactcatttggtaaaatacatttctcatatacacacaa 503

                                                                       
Query: 305 aacacacatatgaaaaagcccctgtggctgtattaaaagatgaaagcttttctgtactgt 364
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aacacacatatgaaaaagttcctgtggctgtattaaaagatgaaagcttttctgtactgt 563

                                                                       
Query: 365 ataagcctaaggaatagggaagattttcttaaacagcacatatgtaaaagcctaaatttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ataagcctaaggaatagggaagattttcttaaacagcacatatgtaaaagcctaaatttc 623

                                                                       
Query: 425 cctggaaggaaaaactcagatattaatatgtaaaccatttctctgtgtatgcatgtctgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cctggaaggaaaaactcagatattaatatgtaaaccatttctctgtgtatgcatgtctgt 683

                                                                       
Query: 485 gcaaatatgtgggccatgggacaacattgaaacattgggaataatttctcagaaactatc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcaaatatgtgggccatgggacaacattgaaacattgggaataatttctcagaaactatc 743

                                                                       
Query: 545 acttctcgtgctctctctctttctctatctttgagacaggatgtttcattctcattgatc 604
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcttctcgtgctctctctctttctctatctttgagacaggatgtttcattctcattgatc 803

                 
Query: 605 tagaac 610
           ||||||
Sbjct: 804 tagaac 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1009
Length adjustment: 10
Effective length of query: 600
Effective length of database: 999
Effective search space:   599400
Effective search space used:   599400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)