BAC Information

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BAC

Clone NameMSMg01-336J02
Chromosome6 (Build37)
Map Location 93,216,655 - 93,217,191
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665805, Prickle2, LOC545866, A730049H05Rik, LOC384461
Downstream geneLOC100043253, LOC665831, Magi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336J02.T7 (MSMg01no336_j02.b1)MSMg01-336J02.TJ (MSMg01no336_j02.g1)
ACCAG451555AG451556
length659718
length of high quality
(start - end)
73 (111 - 183)537 (73 - 609)
definitionCHROMAT_FILE: MSMg01no336_j02.b1 PHD_FILE: MSMg01no336_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:39 2005CHROMAT_FILE: MSMg01no336_j02.g1 PHD_FILE: MSMg01no336_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGCG
GAATTCTCAACTGTACGAAATACCGATNNGGCTGAGNNAAGCACCTGNAA
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCANAGCAAC
CCTGCAATTCTGCCTCACACCAGTTAGCATGGCTAAGATCAAAAAGTTTC
AGGGTGGAAACAGGCAAGAACACTGGGCAAAGGAATGTGGTGGAAAAGAA
GAAAACACCCCCCCCCCCTGCTGGGGGGATTGCAACTTGGAAAAACCCTC
TGGAAAAACATTGGGGAGATCCCCCCAAAAAAATGGGGGGAAAAACCCCT
CCCCCAAAAAACCCCCCGGGNAAAACCCCCCCCCCGGGGTTAAATCCCAA
AAAAAATTGTCCCTCTTATTAATAAAAAAAAAAAAGGGGGCCCCCCCNNN
NNNNTNNNNNNNCGAAGCAAGAGAGAGAAGTGTATANNACCNNNCGCCCG
GGGGGGGGNAAGAAAACCTCTTTTATATCCCCCCCCCATCTAGGGAGGGG
GGGGGTTTTTGNNGNGGAAGGGGGGGGGGGGTTGTTTTTTTTTTCTCTTT
TAAGAGAGAAAGAGAAATTTTTCGCTTTTTTTTTTTTGAAAAAAAAAAAC
AAAGCTGCA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTGATCTTTCTTTCAGTCCCATTGAGC
CAGTGCTCTCAGCCTGGCAGCACTGTCGACTCTATGATTTCACTCCGTGA
GTCATCCTGTTCCTTGTGGATGGTGCCACCTTCACACAAAAGCATTCGTC
ACACCCATCACTGCCAATGAAATGAATGTTCCAGAAAGCCCCCTCTTCCA
TACAACATCACAATAGCTTCACTGGAAGGATGGTGACAGCAACTTCCTTA
TGCGGCTCAACAAGCACAGAGTGACTCAGTGCCTCCCACAGGGAAGGGGG
GTGCTTCTTTTCAGTGAGTCCTGTGGTCTCTCTCTTTTCTTTCCCTCAGT
CATTTGCTGATCATGACTTCCATTAATTTCATGAGAAGATCAGAATGCCA
TCATGAGGTGATCAGGATACCGTTTGGTTATTGCCACAATAAATGCTATT
TAAGATATTATAATTTAACGTATCCTGAACGCTGTGCTTTGCACGTGACG
GTGGACTAGACCCTCACAAATCTGGAGCAGCATTACTCTATTTGCAAGGT
GACTAACTCTGTGCCGGACAGGTTTATATCAACTTGATATAAGATAAAGT
CATCTGAGAGGAGGGAATCTCAATTTAAAAAAAAAGCTTCCAGTAGACCA
AGTTGTAAGCCAAGCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_j02.g1 MSMg01no336_j02.g1 CHROMAT_FILE:
MSMg01no336_j02.g1 PHD_FILE: MSMg01no336_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:39 2005
         (537 letters)



>mm_chr6_93216455_93217391
          Length = 937

 Score =  961 bits (497), Expect = 0.0
 Identities = 527/537 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgatctttctttcagtcccattgagccagtgctctcagcctggcagcactgtcgactc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 737 cttgatctttctttcagtcccattgagccagtgctctcagcctggcagtaccgtcgactc 678

                                                                       
Query: 61  tatgatttcactccgtgagtcatcctgttccttgtggatggtgccaccttcacacaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tatgatttcactccgtgagtcatcctgttccttgtggatggtgccaccttcacacaaaag 618

                                                                       
Query: 121 cattcgtcacacccatcactgccaatgaaatgaatgttccagaaagccccctcttccata 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cattcatcacacccatcactgccaatgaaatgaatgttccagaaagccccctcttccata 558

                                                                       
Query: 181 caacatcacaatagcttcactggaaggatggtgacagcaacttccttatgcggctcaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caacatcacaatagcttcactggaaggatggtgacagcaacttccttatgcggctcaaca 498

                                                                       
Query: 241 agcacagagtgactcagtgcctcccacagggaaggggggtgcttcttttcagtgagtcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agcacagagtgactcagtgcctcccacagggaaggggggtgcttcttttcagtgagtcct 438

                                                                       
Query: 301 gtggtctctctcttttctttccctcagtcatttgctgatcatgacttccattaatttcat 360
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 437 gtggtctctctcttttctttccctcagtcatttgctgaccatgacttctattaatttcat 378

                                                                       
Query: 361 gagaagatcagaatgccatcatgaggtgatcaggataccgtttggttattgccacaataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 377 gagaagatcagaatgccatcatgaggtgatcaggataccgtttggttattgccacaatag 318

                                                                       
Query: 421 atgctatttaagatattataatttaacgtatcctgaacgctgtgctttgcacgtgacggt 480
           |||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 317 atgctatttaagatgttataatttaacatatgctgaacgctgtgctttgcacgtgacggt 258

                                                                    
Query: 481 ggactagaccctcacaaatctggagcagcattactctatttgcaaggtgactaactc 537
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggactagaccctcacaaagctggagcagcattactctatttgcaaggtgactaactc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)