BAC Information

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BAC

Clone NameMSMg01-337B04
Chromosome6 (Build37)
Map Location 129,664,101 - 129,664,597
singlet/doubletsinglet
Overlap geneKlri1
Upstream geneLOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755
Downstream geneKlri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337B04.T7 (MSMg01no337_b04.b1)MSMg01-337B04.TJ (MSMg01no337_b04.g1)
ACCAG451939AG451940
length943731
length of high quality
(start - end)		---497 (79 - 575)
definitionCHROMAT_FILE: MSMg01no337_b04.b1 PHD_FILE: MSMg01no337_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:20 2005CHROMAT_FILE: MSMg01no337_b04.g1 PHD_FILE: MSMg01no337_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAAACCTTCCTTTXXXXXXXXXXXXXXXXXXXXXTTTCXXXXXXXXXXX
XXXXXXXXTCTGCTCTATCTCCCTCATATTCANATGCAATAAACAATGAA
TTGACTACATTCANNGTCAAAAAATGGACAAAACCTTAAAATCATGCCAT
TCCTTAGGGTAGGCAAAATCTTTGAGTTCAAAGAATNNCTCTTGGTTAAG
NTTCANAANACTTTGGTATAANAANNAAAAAAAATACCAAATNCCNTGTC
ATAAACTGAAGATTTCTTTGAATTTTTTTGTTTAAAATAACTTTATTGAA
ATTGACATTTAATTTTTGATTTAAATAAGGAAATCTCATCTTAAAAAATG
AATAATTGGTGGAAATTTAATTTTGTGGAAAGAACCGAAACTTCAAAAAA
AAAACCTTGGGAGATGTTTGGAAAATTTTTTCCCGGGTTGGGTTCCCCCC
CCCAGAAAAAAAAAAATTTTTTCTTTAAAAAAAAAGTTTTTTCTTTTTTT
TTAAAAAAAATTTCTTTTTCTTTTCCCCGGTTTTTTTTTAACAAAAAATT
TTCCCGCGTTTTTTTTATTTTCTTTTTTTTAAAAAAAAAAAAAAAAAACA
CCCTCTGCCCCCCTAATTTTAAATAAAGGGCGCCCCACCCCAAAATATGG
GGTATTTTTTTTATAATATCTCTTTAAAAAAATATAACCCTCTTCTTTTT
TTATTATAAATAAAAAAAANNCCCCCCCCAAAAAGAGGTTATTTCCCCCC
TTTTTTTCTNNNNGGGTTCTCTTTTTTTTTTTTTTTNTCNTCTCCCCACC
CCNNNACAAAAAAANTTAATTTAAAATACCNCCCCCCCCCCCACAAANNN
NCCCCACCAAAAAAAAAAAAAATTTCTATACTAACACAACACCCAACCTA
ACACCAACATTTTCTCTCTTAATAATTTGTTGTGGGGGGGTTG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCAGCTGGTAGACACTATG
CAGAAATCAGTTACAGACTACAAAGTGTCCCAAAGGTGATCTGCAGAGTT
CCAGCCCCAACAGTCCTATAGAACTGGAAATCCCTGGACTTGTTAAAGGT
GAGGTAAACTGGTCCAGTTGATGTGACTGCTCCCTGTCTCTTCAGCTGGG
TTAGCAAACCAATTGCTTCTTATGAAGACTCCATTTACTGTAATCCTCTC
CTGGCCTTTGGCTAATATTCAAGTCTTTCTGGGTCCTCACAAAAGAATCC
TAATTTGATCAGGAAGTACTTGCAGAGGAAAATTTGTCAGCTCTTATCCT
CAACAAAGGGCTGGAATATTAGGTCAAAGGAAACCGTATTGAAAATACCC
ATAGACATTCCAAGATTATATTGATTTAAAATATTTGTTCTATGTATCCT
AGCCAAACAAGCATAATTTATAGATGAGTAATACAGCTTTTGCATTGTAA
AATTTACTTTTCTCCAAATAAAGATTGCTAAGGCCTTGTCACAGATTTCA
CAGGGGCACATAAGACCCATAAGAGGGCTGTGGAGAACCGGCCTGCCTCC
ATCTTAGTTCTTAAAAGCATTTTAACGTAAAGACCAACTAAATTTGTCCC
CGTTTATGAATAACCCCCCGTTTTTTCAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_b04.g1 MSMg01no337_b04.g1 CHROMAT_FILE:
MSMg01no337_b04.g1 PHD_FILE: MSMg01no337_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:20 2005
         (497 letters)



>mm_chr6_129663901_129664797
          Length = 897

 Score =  891 bits (461), Expect = 0.0
 Identities = 488/497 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattcagctggtagacactatgcagaaatcagttacagactacaaagtgtcccaaaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcagctggtagacactatgcagaaatcagttacagactacaaagtgtcccaaaggtg 260

                                                                       
Query: 61  atctgcagagttccagccccaacagtcctatagaactggaaatccctggacttgttaaag 120
           ||||||| ||||||||| ||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 261 atctgcacagttccagctccagcagtcctacagaactggaaatccctggacttgttaaag 320

                                                                       
Query: 121 gtgaggtaaactggtccagttgatgtgactgctccctgtctcttcagctgggttagcaaa 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaggtaaactggtccagttgatgtgactgctccctgtctcttcagctgggttagcaaa 380

                                                                       
Query: 181 ccaattgcttcttatgaagactccatttactgtaatcctctcctggcctttggctaatat 240
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ccaattgcttcttacgaagactccatttactgtaatcctctcctggcttttggctaatat 440

                                                                       
Query: 241 tcaagtctttctgggtcctcacaaaagaatcctaatttgatcaggaagtacttgcagagg 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tcaagtctttctgggtcctcacaaaagaattctaatttgatcaggaagtacttgcagagg 500

                                                                       
Query: 301 aaaatttgtcagctcttatcctcaacaaagggctggaatattaggtcaaaggaaaccgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 aaaatttgtcagctcttatcctcaacaaagggctggaatattaggtccaaggaaaccgta 560

                                                                       
Query: 361 ttgaaaatacccatagacattccaagattatattgatttaaaatatttgttctatgtatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgaaaatacccatagacattccaagattatattgatttaaaatatttgttctatgtatc 620

                                                                       
Query: 421 ctagccaaacaagcataatttatagatgagtaatacagcttttgcattgtaaaatttact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagccaaacaagcataatttatagatgagtaatacagcttttgcattgtaaaatttact 680

                            
Query: 481 tttctccaaataaagat 497
           |||||||||||||||||
Sbjct: 681 tttctccaaataaagat 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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