BAC Information

Click to search

BAC

Clone NameMSMg01-337B07
Chromosome6 (Build37)
Map Location 80,778,644 - 80,779,051
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043392, Lrrtm4, LOC100043390
Downstream geneLOC100042991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337B07.T7 (MSMg01no337_b07.b1)MSMg01-337B07.TJ (MSMg01no337_b07.g1)
ACCAG451945AG451946
length764769
length of high quality
(start - end)		529 (46 - 574)408 (75 - 482)
definitionCHROMAT_FILE: MSMg01no337_b07.b1 PHD_FILE: MSMg01no337_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:20 2005CHROMAT_FILE: MSMg01no337_b07.g1 PHD_FILE: MSMg01no337_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCCAATGGTTGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGGTAAAAAATTCAGGTGACCGCA
GATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAG
AAAACTGGACATAGTACTACCAGAGGATCCCGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTTCCAACCAGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAATTATGGTACATTTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAATCACAAAG
GAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCACAACTT
AGAATACCCAAGATATAGAAACCATTTGCTTAACACACGAACCTCTTTAA
AAATGAATACTGAATTGGGGAAACCTTGCCCTCCCCTAAAAATTGGAAAC
AAAACACCGGTGGA

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTAGAAGCTTGTCTACTTGCTAGAC
GTGATGATCTGATCATTTGCAATTAATGGTGCTGTCATTCAGATGGCTTT
GTACTGCAGTCTAAATATATAGTGATATATAAAGAAGACTGGGCAGTGAA
ATGGTATCTTTGAATATCCAGGTTCCTGATATTCTCAAAATTCCAAGGAA
CAGGGATATTAATGATGAGATGACTTTGAGCCCAGCCTCAGCTAGCCTGC
TGCTGTTTCCAGAATGAGGCAAATACAAATCAGCTGTGATACTCAAGGTG
CAGTGACAGATTCCTAGAAGTCTTCAGAGAAAAGTGAGCCTGTATGTAGT
GACAGATTCCTAGAAGCCTTCAGAGAAAAGTGAGCCTGTATGTTAGTGGA
TCTGGGAAGTCCCAGTACAGAACAATATCCACATTGCCATAACAGATCTG
GCTAGACGCTTAATCAAATAAAATTGTGCCAATATAAAAAACCAATTCCC
CTTCACATTTGAAACCCACCCAAAATATATAATTGCGCTAATGGTGGATC
CAAAAACTATCTTCTATTTTTCTAGGCTTTCTTTTATTATGAATTTTTTT
TCTGCAAAATCGTCTTCCGCTCCCTTTATATGTTTTTCCCCTCTTTTTTT
TTTCCTATTTCCATTACTTGTTCCCCTACTCCCCATTTTCCCCCATTTTT
TTTTTTTATTCCTCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_b07.g1 MSMg01no337_b07.g1 CHROMAT_FILE:
MSMg01no337_b07.g1 PHD_FILE: MSMg01no337_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:20 2005
         (408 letters)



>mm_chr6_80778444_80779251
          Length = 808

 Score =  781 bits (404), Expect = 0.0
 Identities = 407/408 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagaagcttgtctacttgctagacgtgatgatctgatcatttgcaattaatggtgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagaagcttgtctacttgctagacgtgatgatctgatcatttgcaattaatggtgctg 260

                                                                       
Query: 61  tcattcagatggctttgtactgcagtctaaatatatagtgatatataaagaagactgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattcagatggctttgtactgcagtctaaatatatagtgatatataaagaagactgggc 320

                                                                       
Query: 121 agtgaaatggtatctttgaatatccaggttcctgatattctcaaaattccaaggaacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgaaatggtatctttgaatatccaggttcctgatattctcaaaattccaaggaacagg 380

                                                                       
Query: 181 gatattaatgatgagatgactttgagcccagcctcagctagcctgctgctgtttccagaa 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatattaatgatgagacgactttgagcccagcctcagctagcctgctgctgtttccagaa 440

                                                                       
Query: 241 tgaggcaaatacaaatcagctgtgatactcaaggtgcagtgacagattcctagaagtctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaggcaaatacaaatcagctgtgatactcaaggtgcagtgacagattcctagaagtctt 500

                                                                       
Query: 301 cagagaaaagtgagcctgtatgtagtgacagattcctagaagccttcagagaaaagtgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagagaaaagtgagcctgtatgtagtgacagattcctagaagccttcagagaaaagtgag 560

                                                           
Query: 361 cctgtatgttagtggatctgggaagtcccagtacagaacaatatccac 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctgtatgttagtggatctgggaagtcccagtacagaacaatatccac 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |