BAC Information

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BAC

Clone NameMSMg01-337F09
Chromosome6 (Build37)
Map Location 147,312,898 - 147,460,530
singlet/doubletdoublet
Overlap geneEG622129, Ccdc91
Upstream geneItpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh
Downstream geneLOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337F09.T7 (MSMg01no337_f09.b1)MSMg01-337F09.TJ (MSMg01no337_f09.g1)
ACCAG452135AG452136
length746753
length of high quality
(start - end)		583 (45 - 627)465 (74 - 538)
definitionCHROMAT_FILE: MSMg01no337_f09.b1 PHD_FILE: MSMg01no337_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:41 2005CHROMAT_FILE: MSMg01no337_f09.g1 PHD_FILE: MSMg01no337_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,312,898 - 147,313,477)(147,460,070 - 147,460,530)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCCCTCTCTGGGCAAATCGGCTCATGCAGGGGAGATGCACCACA
CTATATAGCACACTACAGCCTTTGCTCAGCCTTTGGTCTGGAACTGGAGT
TTGACAGAGTTTCTGTCTGCAGTGACTAGCCGGCCCAGGCTCTGTGTTGG
GAACTTGATCAATGAGAATCAGAGGCTTTGGTTCAGCCTCAGTTCCTCTA
ACTGGTCTCTGATTATTTGGCGCTGTCTTCAAAGGAGTAAACGTAACAGG
AAGCAAATGATCTCTAGTTTTATTTGGAGAGCAGACCCACTTCAATTATT
ATACAGGAGACTTTGGGGGTGGGGCTGAGTATCTTAGACACTCTAGCTGG
TTTGGGCGGGGACTGGGGTGCACACTCTTCTGCAGGGATGACTGTTGCAG
ATTTTCTTCACAATGGCTTGGTACCAACCACTGCACACAGAGAAGTTATG
GCAACATTTAAGGTTTACTGTCAAGGCCTTTCTGTATCAGGGCTCTTCTG
GAATCTTCCTCATTTCATCTACCAACTCACTGCCCTGTAGGCTTTATGAA
TCTTATCTATGGATGAAGGGAGGAATAGACCAAGCAGGGATACATAGTGG
TTATGGTTGCAGGCTCTGCAGCTAGGCTGCCTGATCCTATTATATTCTAG
CTGTACCCAACTAGGCCAGGTCATTAAACTTCCCAATCCCCCAGTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTTTCCTATACATACATTTTTGTC
CTTTTCTTTCCTTTTTTTTTCTTAACATGCAAAGTGTCAACTTTCCTTAT
GGTGTTTTCATACTTACTAGTTTTTATTTGACCCTTTCCTCCAACCCCCT
AACCCTGTACTGCCTGCTCTACCCAAGTGCAAGCTCATCCACTCCCAGGA
CCTTCCCTCCCCACTATCAAATCACATGTGCTCCATTCCAGTTCCCTCCA
TGGACGGACGCTCCTCAGTCCCAGGTACATGCGCATATATGAAAGTCAAA
AGCTGAGATATACATATGACAGAATACATGCATGACTGTCTGAGCCCAGC
TCACCTCACTTCATACTTTCCAGTTCCATCCATCTCCTACAAATTTTGTA
ACTCCATTTTTTTATAACTGATCAAATCCCAATGTGCATAAGTATGTTTT
CATATCTCTGTTGACAGCATCTACTCCTTGCTTCTGGGAGGAGTAGCATT
GAACACAGCTGTGCAGTTATCTCTGTAGTGAGATACCCAGCCTGTTAGGT
GCATGGCTAGGAGATGGTAAAACAGGGAATGGTTCCCCCACCACTGGGGG
AAAGGTCTTTTCCCAAATTTTTTGCTAAATTTCCAAAAGACAGCTTTCTT
AAAGGAGGAAAAAAAAGCCCCAAAGAGTGTTTTTTCTTCCTTAAAATCAT
AAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_f09.b1 MSMg01no337_f09.b1 CHROMAT_FILE:
MSMg01no337_f09.b1 PHD_FILE: MSMg01no337_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:41 2005
         (583 letters)



>mm_chr6_147312695_147313677
          Length = 983

 Score = 1114 bits (576), Expect = 0.0
 Identities = 579/580 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctccctctctgggcaaatcggctcatgcaggggagatgcaccacactatata 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctcccactctgggcaaatcggctcatgcaggggagatgcaccacactatata 263

                                                                       
Query: 64  gcacactacagcctttgctcagcctttggtctggaactggagtttgacagagtttctgtc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcacactacagcctttgctcagcctttggtctggaactggagtttgacagagtttctgtc 323

                                                                       
Query: 124 tgcagtgactagccggcccaggctctgtgttgggaacttgatcaatgagaatcagaggct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgcagtgactagccggcccaggctctgtgttgggaacttgatcaatgagaatcagaggct 383

                                                                       
Query: 184 ttggttcagcctcagttcctctaactggtctctgattatttggcgctgtcttcaaaggag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttggttcagcctcagttcctctaactggtctctgattatttggcgctgtcttcaaaggag 443

                                                                       
Query: 244 taaacgtaacaggaagcaaatgatctctagttttatttggagagcagacccacttcaatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taaacgtaacaggaagcaaatgatctctagttttatttggagagcagacccacttcaatt 503

                                                                       
Query: 304 attatacaggagactttgggggtggggctgagtatcttagacactctagctggtttgggc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attatacaggagactttgggggtggggctgagtatcttagacactctagctggtttgggc 563

                                                                       
Query: 364 ggggactggggtgcacactcttctgcagggatgactgttgcagattttcttcacaatggc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggggactggggtgcacactcttctgcagggatgactgttgcagattttcttcacaatggc 623

                                                                       
Query: 424 ttggtaccaaccactgcacacagagaagttatggcaacatttaaggtttactgtcaaggc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttggtaccaaccactgcacacagagaagttatggcaacatttaaggtttactgtcaaggc 683

                                                                       
Query: 484 ctttctgtatcagggctcttctggaatcttcctcatttcatctaccaactcactgccctg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctttctgtatcagggctcttctggaatcttcctcatttcatctaccaactcactgccctg 743

                                                   
Query: 544 taggctttatgaatcttatctatggatgaagggaggaata 583
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taggctttatgaatcttatctatggatgaagggaggaata 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no337_f09.g1 MSMg01no337_f09.g1 CHROMAT_FILE:
MSMg01no337_f09.g1 PHD_FILE: MSMg01no337_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:41 2005
         (465 letters)



>mm_chr6_147460070_147460934
          Length = 865

 Score =  891 bits (461), Expect = 0.0
 Identities = 461/461 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctttcctatacatacatttttgtccttttctttcctttttttttcttaacatgcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tttctttcctatacatacatttttgtccttttctttcctttttttttcttaacatgcaaa 402

                                                                       
Query: 61  gtgtcaactttccttatggtgttttcatacttactagtttttatttgaccctttcctcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gtgtcaactttccttatggtgttttcatacttactagtttttatttgaccctttcctcca 342

                                                                       
Query: 121 accccctaaccctgtactgcctgctctacccaagtgcaagctcatccactcccaggacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 accccctaaccctgtactgcctgctctacccaagtgcaagctcatccactcccaggacct 282

                                                                       
Query: 181 tccctccccactatcaaatcacatgtgctccattccagttccctccatggacggacgctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tccctccccactatcaaatcacatgtgctccattccagttccctccatggacggacgctc 222

                                                                       
Query: 241 ctcagtcccaggtacatgcgcatatatgaaagtcaaaagctgagatatacatatgacaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ctcagtcccaggtacatgcgcatatatgaaagtcaaaagctgagatatacatatgacaga 162

                                                                       
Query: 301 atacatgcatgactgtctgagcccagctcacctcacttcatactttccagttccatccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 atacatgcatgactgtctgagcccagctcacctcacttcatactttccagttccatccat 102

                                                                       
Query: 361 ctcctacaaattttgtaactccatttttttataactgatcaaatcccaatgtgcataagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 ctcctacaaattttgtaactccatttttttataactgatcaaatcccaatgtgcataagt 42

                                                    
Query: 421 atgttttcatatctctgttgacagcatctactccttgcttc 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  atgttttcatatctctgttgacagcatctactccttgcttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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