BAC Information

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BAC

Clone NameMSMg01-337L06
Chromosome6 (Build37)
Map Location 89,069,852 - 89,070,339
singlet/doubletsinglet
Overlap genenone
Upstream geneGata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik
Downstream geneGm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337L06.T7 (MSMg01no337_l06.b1)MSMg01-337L06.TJ (MSMg01no337_l06.g1)
ACCAG452412AG452413
length749769
length of high quality
(start - end)		569 (69 - 637)488 (75 - 562)
definitionCHROMAT_FILE: MSMg01no337_l06.b1 PHD_FILE: MSMg01no337_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:09 2005CHROMAT_FILE: MSMg01no337_l06.g1 PHD_FILE: MSMg01no337_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCAGATTCCTGGAGGCAGGAACTGTGGAGGAACACTGCTTGC
TGGTTCATTCTTAGGCTCATGCTTAGCTAGCTTCCTTATGTAGCCCAGGA
CTACCTGCCTAGGAATGGTGCTGCCCACAGTGGGCTGGGCCCTCCCACAT
CATCAATGAAGACAATCCCTTACAAACACATTGACAGACCAATCTGATAA
AGACAATTACTCAGCTGAGACTCTTTCTCAGGTGGTAACAATTTGACAGT
TAATGCTAATTGGGACAGTTAATATTTACATGCATATTAAGTATTTAGCT
ATATTTATCTTAATTCCCTTTAACCGAACATATCAAAAATATTTACTATT
CCGTAGGTAACCAATGTAAAAATATCAACGAATGCTTCTCATACTCTTGT
GTTGTGCTAAGTCTGTGAAATCTGATGAGGTTTATACTTTTGGCCCGTGT
CAATTCCAAAGCTAAATTTTTATCAGAAGCACTCGATCTGCATTTAGATT
TGATAGAGTTTATGTTGAAAGAGATTTACATACCCAAGTAGTTCTAAAAT
ATCTGAACTGATTTGAGCTTCCATTTTTTTAATTCAAATTACTTAAAATT
CAATAAAGCATAAAAACCTCAGGTCCTCATCTCACGGGAGCCCATCGTTT
ACCATCAGCCCAGGTAAGAACGGCCCACCCCACAGAAAATTCTATTGGG

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGTTCACTCTAGGGAGTCAGAGTTA
GACCCAAGTTATGTCGTGGAGCAGGCGTTGGCATCCGCGGGGAACTCGGG
AGTTACGTGCTGGCTCAGCAGTACTGTGAGTACAGAGCACCGCTAGGACA
GTGTCCTAGTTACTTTCTATTGCTGTGAGAAATACCATGAGCAAAAACAA
CTGGGGAAGGAATGAGTTCATTTGGCCTCCATGTCCTGATCACAGTCCAT
CACGGAGGGAAACCAAGGCAGGACCTGAGGCAGAGGCAGTGGAGAAACAC
AGCATACTGGCTCCTTCCTCATGGCTTGCTCACCTGCCTTTCTTACACAA
CTCAGAGCTACCTGTCTAGGGTGGCACCACTCACAGTGGCCTGGGCCCTC
CTAGATCAGTGATGAATCAAGAAACTGCCCCACTGATTTGTCTACAGGCC
AATATCTTGGTGACATCTTCTCAATTGAGACTCCTTCTTCCTAAATGACT
CTAGCTTGTAAAGTGACACAACAAATAGTACAGATATATACCCCAGAACC
TTTGCTTGCTATGCCCCCCTTTATAACAACAGATCATTCTGTCCTGCCCC
AAGAACTTACCCTGTCTATTCCTTGCCCCAGTTTATATTCCGCTTCTTCT
TCCCCGTGGTTTGTAGCAAATGGCCCCGAAACAAACACCCCTCCCCTTGG
GGTTTTTGCTTCCTCTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_l06.g1 MSMg01no337_l06.g1 CHROMAT_FILE:
MSMg01no337_l06.g1 PHD_FILE: MSMg01no337_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:10 2005
         (488 letters)



>mm_chr6_89069652_89070539
          Length = 888

 Score =  913 bits (472), Expect = 0.0
 Identities = 484/488 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttcactctagggagtcagagttagacccaagttatgtcgtggagcaggcgttggcat 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 201 atgttcactctagggagtcagagttagacccaagttacgtcgtggagcaggtgttggcat 260

                                                                       
Query: 61  ccgcggggaactcgggagttacgtgctggctcagcagtactgtgagtacagagcaccgct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ccgcggggaactcgggagttacgtgctggctcagcagtactgtgagtacagagcgccgct 320

                                                                       
Query: 121 aggacagtgtcctagttactttctattgctgtgagaaataccatgagcaaaaacaactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggacagtgtcctagttactttctattgctgtgagaaataccatgagcaaaaacaactgg 380

                                                                       
Query: 181 ggaaggaatgagttcatttggcctccatgtcctgatcacagtccatcacggagggaaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaggaatgagttcatttggcctccatgtcctgatcacagtccatcacggagggaaacc 440

                                                                       
Query: 241 aaggcaggacctgaggcagaggcagtggagaaacacagcatactggctccttcctcatgg 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggcaggacctgaggcagaggccgtggagaaacacagcatactggctccttcctcatgg 500

                                                                       
Query: 301 cttgctcacctgcctttcttacacaactcagagctacctgtctagggtggcaccactcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgctcacctgcctttcttacacaactcagagctacctgtctagggtggcaccactcac 560

                                                                       
Query: 361 agtggcctgggccctcctagatcagtgatgaatcaagaaactgccccactgatttgtcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtggcctgggccctcctagatcagtgatgaatcaagaaactgccccactgatttgtcta 620

                                                                       
Query: 421 caggccaatatcttggtgacatcttctcaattgagactccttcttcctaaatgactctag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggccaatatcttggtgacatcttctcaattgagactccttcttcctaaatgactctag 680

                   
Query: 481 cttgtaaa 488
           ||||||||
Sbjct: 681 cttgtaaa 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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