Query= MSMg01no337_l19.b1 MSMg01no337_l19.b1 CHROMAT_FILE:
MSMg01no337_l19.b1 PHD_FILE: MSMg01no337_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:12 2005
(574 letters)
>mm_chr6_111705169_111706141
Length = 973
Score = 932 bits (482), Expect = 0.0
Identities = 516/536 (96%), Gaps = 16/536 (2%)
Strand = Plus / Minus
Query: 1 atttcagttgtatgcatattcttgacaggaatcacgggcttccagattagcggatcagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 atttcagttgtatgcatattcttgacaggaatcacgggcttccagattagcggatcagcc 473
Query: 61 acttattaaccacagagcatatgtgcttccagtgaacctccgtcaacgtagtgaaaaaaa 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 472 acttattagccacagagcatatgtgcttccagtgaacctccgtcaacgtagtg-aaaaac 414
Query: 121 caggacaaattatcagattgttacatttggagttcatgtggtgtggatgcgaagagtggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 caggacaaattatcagattgttacatttggagttcatgtggtgtggatgcgaagagtggc 354
Query: 181 ccatcctcctgctggagggagaggaatacttttttcttggagtacaaactgacatttgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ccatcctcctgctggagggagaggaatacttttttcttggagtacaaactgacatttgca 294
Query: 241 agagaggcaaggagaccaggtttaatggcttccttagtctttagataaagccaacaatat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 293 agagaggcaaggagaccaggtttaatggcttccttagtctttagataaagccaacagtat 234
Query: 301 ctagatagagaagtctctagatcttttcaac------------aatgtataatctgagac 348
||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct: 233 ctagatagagaagtctctagatcttttcaacaacaacaacaaaaa---aaaatctgagac 177
Query: 349 ttccaagatctatttgctacagaatcattctttaactgagtcagccaggtgcttagagag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ttccaagatctatttgctacagaatcattctttaactgagtcagccaggtgcttagagag 117
Query: 409 caccaatccaaagcatcaaggtgaaaacatgcacacaggagattccgtttcagtagtact 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 caccaatccaaagcatcaaggtgaaaacatgcacacaggagattccgtttcagtagtact 57
Query: 469 ggcacagggcagagattcctctgcttgactgctggtctcacagaaactctctagcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 ggcacagggcagagattcctctgcttgactgctggtctcacagaaactctctagcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 973
Length adjustment: 10
Effective length of query: 564
Effective length of database: 963
Effective search space: 543132
Effective search space used: 543132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_l19.g1 MSMg01no337_l19.g1 CHROMAT_FILE:
MSMg01no337_l19.g1 PHD_FILE: MSMg01no337_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:12 2005
(455 letters)
>mm_chr6_111522753_111523607
Length = 855
Score = 687 bits (355), Expect = 0.0
Identities = 406/455 (89%), Gaps = 49/455 (10%)
Strand = Plus / Plus
Query: 1 cttaaagggtttttgaaaatagaatgctgagcacaggggcttataatcctatcaaattgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaaagggtttttgaaaatagaatgctgagcacaggggcttataatcctatcaaattgg 260
Query: 61 aatacttagataggaagattgcatcaagttgtagttcagtctgctctactaactgagtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatacttagataggaagattgcatcaagttgtagttcagtctgctctactaactgagtag 320
Query: 121 tggggcatagagatgggtagggagaccttctctcaacagaccaaaactaagtcgaaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggggcatagagatgggtagggagaccttctctcaacagaccaaaactaagtcgaaggaa 380
Query: 181 acaagcaaacagacaagaaaaagtgtgatgctgtgcaccacatttagagtttaatttatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaagcaaacagacaagaaaaagtgtgatgctgtgcaccacatttagagtttaatttatt 440
Query: 241 aggtctggggtgtggatcctaaagtgcatctcaaactgctgcttagacacaagacacaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtctggggtgtggatcctaaagtgcatctcaaactgctgcttagacacaagacacaag 500
Query: 301 acgcaagacgcaagacgcaagacgcaagacgcaagacgcaagacgcaagacacaagacac 360
||||||||||||||||
Sbjct: 501 acgcaagacgcaagac-------------------------------------------- 516
Query: 361 aagacacaagacacaagacacaagacactctgccctgtggtttctaatttgctcaaattt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 -----acaagacacaagacacaagacactctgccctgtggtttctaatttgctcaaattt 571
Query: 421 cagccacctagaatctttcttccagtatcagcttc 455
|||||||||||||||||||||||||||||||||||
Sbjct: 572 cagccacctagaatctttcttccagtatcagcttc 606
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
