BAC Information

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BAC

Clone NameMSMg01-337M08
Chromosome6 (Build37)
Map Location 71,267,210 - 71,267,666
singlet/doubletsinglet
Overlap genenone
Upstream geneIgk, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070
Downstream geneCd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337M08.T7 (MSMg01no337_m08.b1)MSMg01-337M08.TJ (MSMg01no337_m08.g1)
ACCAG452464AG452465
length751755
length of high quality
(start - end)		552 (45 - 596)457 (77 - 533)
definitionCHROMAT_FILE: MSMg01no337_m08.b1 PHD_FILE: MSMg01no337_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:15 2005CHROMAT_FILE: MSMg01no337_m08.g1 PHD_FILE: MSMg01no337_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGATTGTCCGCCCACTGTCACACTTCTCTGGCTGTGAAATGAGT
TCCTTGGTCAGAAGCAATACTGTGTGGAACACCATGACGACAGATAAAGT
ATTCTGTCAGTTCGTGGATGGTGGTTTTAGCAGAGGCATTACGTGCAGGA
AAGGCAAACCCGTAACCAGAATAAGTATCTACTCCAGTAAGAACAAAACG
CTGCCCTTTCCACGGAGGAAGTGGTCCAATGTAGTCAACCTGCCACCAGG
TTGCTGGCTGGTCACCTTGATTAATGGTGCCCTATCTGGGGCTCAGTGTT
GGTTTCTGCTGTTGGCAGATCTGGCATTCAGCAGTAGCTGTAGCCAGGTC
AGCCTTGGTGAGTGGAAGTCCGTGTTGCTGAGACCAAGCATAACCTCCAT
CTCGACCACCATGGCCACTTTGTTCATATGCCCATTGAGCAATGACAGGA
ATGGCTGGGGAAAGAAGCTGACTGTCCACAGAACGGGTCATCTTATCCAC
TTGATTATTGGACTCCTCTTTGGCTGAAGTCACCTTTTGGTGAGCATTTA
CATGGGACACAAATATCTTCACATCCCTTGCCCCGTTTGGAGAGATCTAT
CCCCATACTTCTTCCCCAGATGTCTTTCCCACCAATTTTTCAATTGTGAT
TTTTTCCAGGTCCTTGACCATCTAGCAAATCCATTGGTTTACGCCCATGA
G

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGTGAGTAGTAATGAGTGAGTA
GGACCAAGAGAGCAATGTGAACAGCACGGACATTCCCCTAAAGAGGTAGA
ATGTGTTTTCTAAATCACAACAATTTAAAGAGACATACAAAGACATACAC
ATGGCCAATAAGCCATGTGAAGAGGCTTGATATCTTTAGTTGGTAACAAA
ATGCAAACGAAAACCCCGATGAGGTAGTCCTTCACAAACACTAGGCTAGA
TACAAAACTAAAACCCACAAGTGATTGGCCTGACAAGGGTTTGGGGACAT
TGGAGTTCTTCTCCATTGTTGGTGCTCTTGCAAATTGGAGTCACCATTAT
ACAAAACAGATAGTTCCCAAACAGATTGACCAAAAGACCCTCCATTTCAC
TCATATGCTAGGTGTGGTGGCAGACACCTGCTGTCCCAGCGCTTGGCACT
TCTAACTTTTTAAACTGTGGGTCACAACCCCAGAAGTGACCATGTAACTG
AACGTGAGGGTTGCACAAGATTTGGCCGCGGATGAAAGGTTTCTGAATTT
GTTCTGATCCCCTCTCCCCAAAATCAAGAGTCTGATGGCTCCAAAGCAAA
TTTTATCCCTGTCAAGGGCTCCTAAAATTCAAGTTGGCTCCTTTGTCCTG
CCGTGCCACCCTGTCTTAATATTTTTTCTCGTTCCCAATTTCTATACTCT
CTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_m08.g1 MSMg01no337_m08.g1 CHROMAT_FILE:
MSMg01no337_m08.g1 PHD_FILE: MSMg01no337_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:15 2005
         (457 letters)



>mm_chr6_71267010_71267866
          Length = 857

 Score =  876 bits (453), Expect = 0.0
 Identities = 456/457 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgtgagtagtaatgagtgagtaggaccaagagagcaatgtgaacagcacggacattcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtgagtagtaatgagtgagtaggaccaagagagcaatgtgaacagcacggacattcc 260

                                                                       
Query: 61  cctaaagaggtagaatgtgttttctaaatcacaacaatttaaagagacatacaaagacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctaaagaggtagaatgtgttttctaaatcacaacaatttaaagagacatacaaagacat 320

                                                                       
Query: 121 acacatggccaataagccatgtgaagaggcttgatatctttagttggtaacaaaatgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacatggccaataagccatgtgaagaggcttgatatctttagttggtaacaaaatgcaa 380

                                                                       
Query: 181 acgaaaaccccgatgaggtagtccttcacaaacactaggctagatacaaaactaaaaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgaaaaccccgatgaggtagtccttcacaaacactaggctagatacaaaactaaaaccc 440

                                                                       
Query: 241 acaagtgattggcctgacaagggtttggggacattggagttcttctccattgttggtgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaagtgattggcctgacaagggtttggggacattggagttcttctccattgttggtgct 500

                                                                       
Query: 301 cttgcaaattggagtcaccattatacaaaacagatagttcccaaacagattgaccaaaag 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgcaaattggagtcgccattatacaaaacagatagttcccaaacagattgaccaaaag 560

                                                                       
Query: 361 accctccatttcactcatatgctaggtgtggtggcagacacctgctgtcccagcgcttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accctccatttcactcatatgctaggtgtggtggcagacacctgctgtcccagcgcttgg 620

                                                
Query: 421 cacttctaactttttaaactgtgggtcacaaccccag 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacttctaactttttaaactgtgggtcacaaccccag 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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