Query= MSMg01no337_n18.b1 MSMg01no337_n18.b1 CHROMAT_FILE:
MSMg01no337_n18.b1 PHD_FILE: MSMg01no337_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:21 2005
(640 letters)
>mm_chr6_36755446_36756480
Length = 1035
Score = 1123 bits (581), Expect = 0.0
Identities = 618/635 (97%), Gaps = 11/635 (1%)
Strand = Plus / Minus
Query: 9 gaattcttagactcttaagtccacgaatataataataacaacaacaaaaattggctgctt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 gaattcttagactcttaagtccacgaatataataataacaacaacaaaaattggctgctt 776
Query: 69 ggtattaatcttgaacaacgtgagtcctggtaactgactgtttggttctggtcttgagaa 128
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 775 ggtattaatcttgaacaacgtgagtcctggtaactgac----tggttctggtcttgagaa 720
Query: 129 gttctcttagtaaataccaaatcacaaatagacatgcctctacccctttgttcacatact 188
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 719 gttctcttagtaaataccaaatcacaaatagacatgcctctacccctttgttcacacact 660
Query: 189 tgtttggaaagctatgttaacttgtgggattccttactagaaattcatctaaaacgaatt 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tgtttggaaagctatgttaacttgtgggattccttactagaaattcatctaaaacgaatt 600
Query: 249 ctaggaagctaaagaacagtgcactcccacctgtgtctggggaaaaacaccctttaagag 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctaggaagctaaagaacagtgcactcccacctgtgtctggggaaaaacaccctttaagag 540
Query: 309 ccataggtgaccatctggcagtcatttgcccttcttctttgattaccatataacagcatt 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ccataggtgaccatctggcagtcatttgcccttcttctttgattaccatataacagcatt 480
Query: 369 atctgctaatcctgcctcctcgtgaccatcatctcttatgatccctgtgatgcatcagcg 428
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 479 atctgctaaccctgcctcctcatgaccatcatctcttatgatccctgtgatgcatcagcg 420
Query: 429 tctgacctttcccctcaacctctatgcacactcaccttatcacctatttgttcatttctc 488
|||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 419 tctgacctttccccccaacctctatgcacactctccttatcacctatt----catttctc 364
Query: 489 cccaaagcttccaaacatgagcattcactttaaacgtttctcttctctctcttctccccc 548
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 363 cccaaagcttccaaacatgagcattcactttaaacatttctcttctctctcttctccccc 304
Query: 549 tttattccagattctaaagtcccaacactgccatagccctttgtgattgactccatggga 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tttattccagattctaaagtcccaacactgccatagccctttgtgattgactccatggga 244
Query: 609 aaaaaa--cctacagtctcttttttt-cctctaag 640
|||||| |||||||||||||||||| ||||||||
Sbjct: 243 aaaaaaaacctacagtctcttttttttcctctaag 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1035
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1025
Effective search space: 645750
Effective search space used: 645750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_n18.g1 MSMg01no337_n18.g1 CHROMAT_FILE:
MSMg01no337_n18.g1 PHD_FILE: MSMg01no337_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:21 2005
(201 letters)
>mm_chr6_36626707_36627311
Length = 605
Score = 292 bits (151), Expect = 9e-84
Identities = 184/197 (93%), Gaps = 4/197 (2%)
Strand = Plus / Plus
Query: 1 cttgggaggcagccagccaagagtagaggaagaaaaatatttcctacaaattcccttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgggaggcagccagccaagagtagaggaagaaaaatatttcctacaaattcccttttc 260
Query: 61 tgttgtcttgttgattg----ccctacaaagacaggaaagaactcaacaaagacaagata 116
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttgtcttgttgattgattgccctacaaagacaggaaagaactcaacaaagacaagata 320
Query: 117 tttgtaagtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagag 176
|||||||||||||||||||||||||||||| | | | | | | | | |||||||||||||
Sbjct: 321 tttgtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagag 380
Query: 177 agagagagagagagaga 193
|||||||||||||||||
Sbjct: 381 agagagagagagagaga 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 605
Length adjustment: 8
Effective length of query: 193
Effective length of database: 597
Effective search space: 115221
Effective search space used: 115221
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
