BAC Information

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BAC

Clone NameMSMg01-338D14
Chromosome6 (Build37)
Map Location 86,948,674 - 87,084,196
singlet/doubletdoublet
Overlap geneAak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1
Upstream geneFigla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik
Downstream geneGkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338D14.T7 (MSMg01no338_d14.b1)MSMg01-338D14.TJ (MSMg01no338_d14.g1)
ACCAG452808AG452809
length709708
length of high quality
(start - end)
599 (50 - 648)580 (75 - 654)
definitionCHROMAT_FILE: MSMg01no338_d14.b1 PHD_FILE: MSMg01no338_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:49 2005CHROMAT_FILE: MSMg01no338_d14.g1 PHD_FILE: MSMg01no338_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,083,601 - 87,084,196)(86,948,674 - 86,949,253)
sequence
NNTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATGCTGTCTAAAGTGGGTGGAATTCGTTTGCAAGCTATGCA
AAGCCTGATCTTACTCACCAGGAGGATGGAAAGGGTTTTTTTAGTTATCT
GAGCTCAGCTGAGTTATCACGCTTGGAGAACCGATTTAAAGGAATTAGAA
TATGATTTCTGAATACACATAACATTAAACTCTTCTCTTTTTCTATGGTA
ATTTAGTTATGGACGTTCAGCGTCTCTGAGTTATTGTTATAAAAGACTTG
TCATCACCGCACTGTGCTGTAGGAGACTGGGCTGAACCTGTACAATGGTA
TACCCTGGAAGTTGCTTTTTTAAAAAATAATAATAATAAACACCTAAAAT
CAGTGCTTGTTACTTGTTATTTCTATACCTGCCATAAAAATAATATGCAC
GTGTTTCAAGTACTTACTGAGGATCATAAAAGCAGAGCTAGCGGGCCAGT
GAGACGGCTCAGCTGGCAAAGGGGCTTGCTGCCAAGCCTGACAGCCTGAG
CTCAATCCATGGGGCCCACATGGTGGAAGGAGAAAACCCACTCCTGANAG
CTGCCCTCTTGCCTCCCTGTGTACACTAAAGGACACAAGCATCCACATAC
ATGCACAGAGACACAAAATAAATGTTAAAAAGTTTTAAACAAAATAGCTA
TCATTCTGT
CCCATGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGCAGCCTAGACTGCACGACACA
CTGTCCCAAAAGAGAAAATCCATCCAGGGCTAAAGCCTGAATGCCAGGCT
GCACTTGCAATCACTTAGTTGTGATAGCCTTAAAATTTGAAAGTCAGGGT
TTGGGTGCACAAGGCAGCAGCAGAAGATATGCTTAGCTTGCACAATGCCC
TGGGGTCTGTCGTCAGTACACAAAAACAATACAGTTAAATCTAGAAGTCT
TGACGGTAATATAAGAATGACTATTTTTTATGATATCAGGTACTTTTAAC
CCCAGAACTTGTGAGGCAAGGACAGGTGGATCTCTGTGAGTTTGAGGCCA
GCCTGTCTACATAACAAGTTCCAGGCCAGCCAGTGAGTGAAACCCTGTCT
TTAGAGGGGGGTAGGGGGCTATTTTTCCCTCTTTTCTTCATAGCATTCTC
CACCTGTTTCAATAACAGGCACTGCGTCGGGGCCCATAACAGCGCCATTT
GAGGACTCCACCCCAACAGAAACCTGCCTTTCACTTCAGTAAAGGTTAAA
CATTTTCTTTAGGAATTTTCTTTCTCACAATTATTATTTTTTTAATTTCC
TGTATAATAGTGGATACAAAATTGTCTTTCTATTAAATAAGTAGTTTGAC
TAATGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_d14.b1 MSMg01no338_d14.b1 CHROMAT_FILE:
MSMg01no338_d14.b1 PHD_FILE: MSMg01no338_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:49 2005
         (599 letters)



>mm_chr6_87083216_87084214
          Length = 999

 Score = 1123 bits (581), Expect = 0.0
 Identities = 592/596 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatgctgtctaaagtgggtggaattcgtttgcaagctatgcaaagcctgatctt 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 ggaattcatgctgtgtaaagtgggtggaattcgtttgcaagctatgcaaagcctgatctt 922

                                                                       
Query: 64  actcaccaggaggatggaaagggtttttttagttatctgagctcagctgagttatcacgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 actcaccaggaggatggaaagggtttttttagttatctgagctcagctgagttatcacgc 862

                                                                       
Query: 124 ttggagaaccgatttaaaggaattagaatatgatttctgaatacacataacattaaactc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ttggagaaccgatttaaaggaattagaatatgatttctgaatacacataacattaaactc 802

                                                                       
Query: 184 ttctctttttctatggtaatttagttatggacgttcagcgtctctgagttattgttataa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttctctttttctatggtaatttagttatggacgttcagcgtctctgagttattgttataa 742

                                                                       
Query: 244 aagacttgtcatcaccgcactgtgctgtaggagactgggctgaacctgtacaatggtata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagacttgtcatcaccgcactgtgctgtaggagactgggctgaacctgtacaatggtata 682

                                                                       
Query: 304 ccctggaagttgcttttttaaaaaataataataataaacacctaaaatcagtgcttgtta 363
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 ccctggaagttgcttttttaaaaaaaaataataataaacacctaaaatcagtgcttgtta 622

                                                                       
Query: 364 cttgttatttctatacctgccataaaaataatatgcacgtgtttcaagtacttactgagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttgttatttctatacctgccataaaaataatatgcacgtgtttcaagtacttactgagg 562

                                                                       
Query: 424 atcataaaagcagagctagcgggccagtgagacggctcagctggcaaaggggcttgctgc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcataaaagcagagctagcgggccagtgagacggctcagctggcaaaggggcttgctgc 502

                                                                       
Query: 484 caagcctgacagcctgagctcaatccatggggcccacatggtggaaggagaaaacccact 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 caagcctgacagcctgagctcaatccatggggcccacatggtggaaggagagaacccact 442

                                                                   
Query: 544 cctganagctgccctcttgcctccctgtgtacactaaaggacacaagcatccacat 599
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgaaagctgccctcttgcctccctgtgtacactaaaggacacaagcatccacat 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no338_d14.g1 MSMg01no338_d14.g1 CHROMAT_FILE:
MSMg01no338_d14.g1 PHD_FILE: MSMg01no338_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:49 2005
         (580 letters)



>mm_chr6_86948475_86949453
          Length = 979

 Score = 1069 bits (553), Expect = 0.0
 Identities = 574/581 (98%), Gaps = 2/581 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggcagcctagactgcacgacacactgtcccaaaagagaaaatccatccagggctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cagggcagcctagactgcacgacacactgtcccaaaagagaaaatccatccagggctaaa 259

                                                                       
Query: 61  gcctgaatgccaggctgcacttgcaatcacttagttgtgatagccttaaaatttgaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcctgaatgccaggctgcacttgcaatcacttagttgtgatagccttaaaatttgaaagt 319

                                                                       
Query: 121 cagggtttgggtgcacaaggcagcagcagaagatatgcttagcttgcacaatgccctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagggtttgggtgcacaaggcagcagcagaagatatgcttagcttgcacaatgccctggg 379

                                                                       
Query: 181 gtctgtcgtcagtacacaaaaacaatacagttaaatctagaagtcttgacggtaatataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtctgtcgtcagtacacaaaaacaatacagttaaatctagaagtcttgacggtaatataa 439

                                                                       
Query: 241 gaatgactatttttt-atgatatcaggtacttttaaccccagaacttgtgaggcaaggac 299
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 gaatgactatttttttatgatatcaggtacttttaaccccagaacttgcgaggcaaggac 499

                                                                       
Query: 300 aggtggatctctgtgagtttgaggccagcctgtctacataacaagttccaggccagccag 359
           |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 500 aggtggatctctgtgagtttgaagccagcctgtctacataacaagttccagtccagccag 559

                                                                       
Query: 360 tgagtgaaaccctgtctttagaggggggtagggggctatttttccctcttttcttcatag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgagtgaaaccctgtctttagaggggggtagggggctatttttccctcttttcttcatag 619

                                                                       
Query: 420 cattctccacctgtttcaataacaggcactgcgtcggggcccataacagcgccatttgag 479
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 620 cattctccacctgtttcaataacaggcactgcgtcggggcccatagcagcgccatttgag 679

                                                                       
Query: 480 gactccaccccaacagaaacctgcctttcacttcagtaaaggttaaacattttctttagg 539
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gactccaccccaccagaaacctgcctttcacttcagtaaaggttaaacattttctttagg 739

                                                    
Query: 540 aattttctttctcacaattattatttttttaatttcctgta 580
           ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 740 aattttctttctcacaattattatttttt-aatttcctgta 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space:   552330
Effective search space used:   552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)