Query= MSMg01no339_k05.b1 MSMg01no339_k05.b1 CHROMAT_FILE:
MSMg01no339_k05.b1 PHD_FILE: MSMg01no339_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:31 2005
(642 letters)
>mm_chr6_47459588_47460629
Length = 1042
Score = 1170 bits (605), Expect = 0.0
Identities = 634/653 (97%), Gaps = 15/653 (2%)
Strand = Plus / Minus
Query: 5 gaattcatggcccatctgacaaaggatggacagtgagagacaaggttgaaccaacagggg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gaattcatggcccatctgacaaaggatggacagtgagagacaaggttgaaccaacagggg 723
Query: 65 ggtcactttagttcttgtcactgtacaacacagtttacataagaatttagtttgatgtgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ggtcactttagttcttgtcactgtacaacacagtttacataagaatttagtttgatgtgg 663
Query: 125 aataaaaactaatttgggaatgaattgcttccataaggagttcccttatagaataattaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aataaaaactaatttgggaatgaattgcttccataaggagttcccttatagaataattaa 603
Query: 185 actcttccttttgttgc---------------caaaaaaaaaaaattagtatcctggata 229
||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 602 actcttccttttgttgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagtatcctggata 543
Query: 230 taaaatgagttttgtcatgctagatttaaaagattattgtatgtttttctgtgcttgtgt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 taaaatgagttttgtcatgctagatttaaaagattattgtatgtttttctgtgcttgtgt 483
Query: 290 gtagttttgttctacaagaaaaatctaaactattcttgttctcccaaggttacagaccta 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtagttttgttctacaagaaaaatctaaactattcttgttctcccaaggttacagaccta 423
Query: 350 tcattcacaaatttaggttaagcgatggctcatcagttaagaacatgtattgttcttgca 409
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 422 tcattcacaaatttaggttaagtgatggctcatcagttaagaacatgtattgttcttgca 363
Query: 410 gaagaccagagtttatttctcagcatgcaaattgggtgactcacaacaaatctggcttct 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaagaccagagtttatttctcagcatgcaaattgggtgactcacaacaaatctggcttct 303
Query: 470 gtgggcaccacacccataaacacaaagccattttttaacatagtgaaaaaatataaatga 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtgggcaccacacccataaacacaaagccattttttaacatagtgaaaaaatataaatga 243
Query: 530 acaaacaaagtaaaaaaacattaaaacaaaacaaaacaaaaacagagaggctagaggcag 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 acaaacaaagtaaaaaaacattaaaacaaaacaaaacaaaaacagagaggctagaggcag 183
Query: 590 ttaagatcactggatgctcttccagagtgtcagggttcagtccccagcaccta 642
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ttaagatcactggatgctcttccagagtgtcagggttcagtccccagcaccta 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_k05.g1 MSMg01no339_k05.g1 CHROMAT_FILE:
MSMg01no339_k05.g1 PHD_FILE: MSMg01no339_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:31 2005
(487 letters)
>mm_chr6_47334056_47334942
Length = 887
Score = 828 bits (428), Expect = 0.0
Identities = 471/490 (96%), Gaps = 8/490 (1%)
Strand = Plus / Plus
Query: 6 taatgaaaatctgagtgttcagagtacaaagaaggacactgaaaatgggctttccctgtt 65
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 taatgaaaatctgagtattcagagtacaaagaaggacactgaaaatgggctttccctgtt 257
Query: 66 tgctcttcaaaaataccctcactggcaactacataatgagatgaactcaaattggcacta 125
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 258 tgctcttcaaaaataccctcactggcagctacatagtgagatgaactcaaattggcacta 317
Query: 126 atcccccaaggcatccctaagaggacaccatgctaggaactcttttggttttgt------ 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 318 atcccccaaggcatccctgagaggacaccatgctaggaactcttttggttttgtttgctt 377
Query: 180 --ttgcttgcttgcttgcttgcttgcttgcttgcttgcttgcttgcttgcttgcttgctt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 378 gcttgcttgcttgcttgcttgcttgcttgcttgcttgcttgcttgcttgcttgctagctt 437
Query: 238 gcttgcttgcttgcttccacatggctgtgatgacaaatttccctttcccttctttagaag 297
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcttgctagcttgcttccacatggctgtgatgacaaatttccctttcccttctttagaag 497
Query: 298 cgtgttgaatgcacaggataatgcctagttcctgcttgttgaatcaggcccatgtcactt 357
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 498 cgtgttgaatgcacaggataattcctagttcctgcttgttgaatcaggcccatgtcactt 557
Query: 358 tggccattgtatcttctcctttactacactgaatcagcttgctagggtttactgtgtcca 417
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 558 tggccatggtatcttctcctttactacactgaatcagcttgcttgggtttactgtgtcca 617
Query: 418 agttccccaactgttggggctgaagaaatgctttagtggctaagagtgggtactgctcct 477
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 618 agttccccaactgttggggctgaagaaatgctttagtggttaagagtgggtactgctctt 677
Query: 478 gcaaagaatc 487
||||||||||
Sbjct: 678 gcaaagaatc 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
